Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0259 ATGAAGAGGGCAAGGGATGATATATACTCAGCCTCTGCCTCTCAATTCAAACGCCCCTTTTCTTCGTCGCGTGCTGATTCCTATGGACAAAATCAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGGGGAGGTAGCAATGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCACAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAAGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAATTGTTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCAAAAGGTTATGAGATAACACTTGACGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGGTTCCAAAGTGATGAGCATGTCTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAGGTTTACAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTAGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGTGGAGTTCTACAGCCCCAATGATGCGCCAAATGCCACCAGACAAGCAACGCTATCGAAGAGACAGACTTCCTTCCCATGATCATGATATGAGTGCTGAACGTCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGAAAATAGGGATAGGAGAATGCGTGATCAGGAAGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCGGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAATTGAGCAGTTCTGATGATTACCAAACATTCCTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTGCTTGGAAAGCATTCAGATCTTATGGACGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGTTCATTTAGCAAGACCATCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGGGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCAGATTATCCAATTCCTACAGCCAGTCAGAGATCTGAGCTTGGCGCTCAAATATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATCAGTGTGGAGACTATGAACCGTATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGATTGTATGGTGATCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTTCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGCCGTTCTGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTGGATCACCGCAGCTTCTATTTCAAACAGCAAGATTCAAAGAATTTGAGCACAAAATCCTTGGTTGCTGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCTATCGCGGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATTCTGATGCTGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTACATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAGTCTCATGCAATAGAAAGGGCAGAGGATAGAAAAACTGGGCACAATGTTCGCAATTTTGGTGTACCAGGCATAGGAGGTGACAGAAGCCCTCATGGAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGAAACAAAGAATGTTCACCGGACTAGTATAGCAACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACATGGTTGTAGAGATGATCCATTAATGGATAAGGGACTGAAAAATGTAGAATGCAATGATAAAGCATCCGGATTTAGCAAACCATTTACCTCTGATGATCAAGGAGCTAAAAACAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACCAGCTTAGATGTATCACCAGCCCGTGCCCTTACTCCCTCACGACCTACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGTCAATGTACCATTGGTGGAGGGATCTGACATGGCAACTCCTGTTCCTGTGGCCAATGGTGTTTTAAGTGAGAGCAGTAAAGTTAAAACTCATGATGAATCTGCTGGACCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCAGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGTGCAGTCAATGGCTAAATCAAAACACAACACTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGACGATGAGGATAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGACATAGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATTGGTGATGCACAAGCTGGGGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGACGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTACGAGAGGATCTTATCGGCGAAAACAAATTCAATGAATGCAGAAATAAAATGGAAAACAAAAGATGCTAGTTTACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATCGGGAACCAGTCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTCGCAACAGATGATGTGGACAGTAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGATTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCGAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCACAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCTATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTCTTCTTCCGGCCGAGAAAGAAGAGACGAACGCCGGCAGGGACCAGAACCTCCCAGTTTCGTAGGGATAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCATAA 4176 0.41 MKRARDDIYSASASQFKRPFSSSRADSYGQNQVPGSGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNEWSSTAPMMRQMPPDKQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRENRDRRMRDQEEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMASDFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDVHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQILNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETMNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDAAGIHEDLYKLVRYSCEELFSSKELLHKIMRLWSTFLEPMLGVPSQSHAIERAEDRKTGHNVRNFGVPGIGGDRSPHGDSLSMNSRLPKSDKNEADGRLTETKNVHRTSIATNDKENGSVGGEHGCRDDPLMDKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTSLDVSPARALTPSRPTDVDDSVAKSQVVNVPLVEGSDMATPVPVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKSKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGIGDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSMNAEIKWKTKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDVDSKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTPAGTRTSQFRRDREERFRKLLACS* 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 246 312 - -
Pvu4g0259 1391 ProSiteProfiles PAH domain profile. 58 128 IPR003822 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 768 833 - -
Pvu4g0259 1391 SMART hdac_interact2seq4b 474 574 IPR013194 -
Pvu4g0259 1391 Pfam Sin3 family co-repressor 476 568 IPR013194 -
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 434 453 - -
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 1 56 - -
Pvu4g0259 1391 Pfam C-terminal domain of Sin3a protein 1111 1358 IPR031693 -
Pvu4g0259 1391 Pfam Paired amphipathic helix repeat 363 407 IPR003822 GO:0006355
Pvu4g0259 1391 Pfam Paired amphipathic helix repeat 165 209 IPR003822 GO:0006355
Pvu4g0259 1391 Pfam Paired amphipathic helix repeat 81 125 IPR003822 GO:0006355
Pvu4g0259 1391 Gene3D Paired amphipathic helix 64 126 IPR036600 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 212 312 - -
Pvu4g0259 1391 ProSiteProfiles PAH domain profile. 142 212 IPR003822 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 1003 1023 - -
Pvu4g0259 1391 SUPERFAMILY PAH2 domain 139 211 IPR036600 GO:0006355
Pvu4g0259 1391 SUPERFAMILY PAH2 domain 56 127 IPR036600 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 937 958 - -
Pvu4g0259 1391 Gene3D Paired amphipathic helix 339 412 IPR036600 GO:0006355
Pvu4g0259 1391 Gene3D Paired amphipathic helix 141 213 IPR036600 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 797 811 - -
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 212 239 - -
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 983 1002 - -
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 14 34 - -
Pvu4g0259 1391 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1376 - -
Pvu4g0259 1391 PANTHER SIN3B-RELATED 1 1376 IPR039774 GO:0003714
Pvu4g0259 1391 SUPERFAMILY PAH2 domain 344 410 IPR036600 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 1039 1059 - -
Pvu4g0259 1391 Coils Coil 547 567 - -
Pvu4g0259 1391 ProSiteProfiles PAH domain profile. 341 410 IPR003822 GO:0006355
Pvu4g0259 1391 MobiDBLite consensus disorder prediction 934 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0259 Pvu-Chr4 2337287 2348861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0259 43 161 WRKY Transcription Factor Family AT4G12020 50.000 5.19e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu4g0259 Sin3a_C 1.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0259 K11644 - gmx:100807181 2428.67