Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0254 ATGGAGAACTCGGAGAAGGTGGTGGCTGTGATCATGGTGGGTGGGCCCACCAAAGGGACCAGATTTCGGCCTCTTTCCTTCAATATTCCCAAACCCCTTTTCCCTCTGGCTGGCCAGCCAATGGTTCACCATCCTATTTCTGCTTGCAAAAGGATACCCAATTTGGCTCAAATATATCTTATTGGATTCTATGAGGAGCGAGAATTCGCTCTATATGTCTCTTCAATCTCGAATGGGCTGAAATTACCAGTAAGATATTTGAAAGAGGATAAACCGCGTGGTTCAGCAGGTGGCCTTTACTACTTCAGAGATATTATCATGGAAGACAGCCCATCACATATATTTCTGTTAAACTGTGATGTTTGCTGCAATTTCCCACTACCAGCAATGCTTGATGCACATAAAAGATATGGTGGGATGGGGACAATGTTGGTGATCAAGGTTTCAGCTGAATCTGCTAACCAATTCGGTGAGTTGGTTGCTGATCCAACCACTAATGAGTTGCTGCATTATACTGAGAAACCTGAGACATTTGTCAGCAATTTGATAAATTGTGGTGTGTACGTTTTCACCCCTGATATATTTACTGCCATCGACGATGTATATATTAATCGAGAAGGCAGAGCTAATCTACGCCGTCTCTCCAGCTTTGATACACTCCAATCTGCCACAAGGACTATTCCTGTAGATTTTGTAAGACTGGATCAAGATATATTATCACCTCTAGCTGGGAAGAAGCAATTATATACATATGAGACAATGGATTTCTGGGAGCAAATTAAAACTCCAGGAATGTCATTGAAATGCTCAGAATTGTATCTTGCCCAATTCCGGTATACTTCACCTGATCTTTTGGCCAGTGGAGATGGTAATAAGAGTGCAACAGTTTCTGGTGATGTATATATTCATCCATCTGCAAAAGTTCATCCTTCTGCAAAGATTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGCGTCAGGTTAAGCGGTTGTATCATCTTGGATGATGTTGAAATTAAGGAAAATGCTTTTGTCACAAACTCAATTATTGGATGGAAGTCATCACTTGGAAGATGGTCACATGTGCAGGCTGATGGTAACTACGATGCAAGACTTGGCACAACCATCCTAGGGGAAGCTGTAACTGTTGAAGATGAAGTGGTAGTGTTCAACTGCATTGTTCTTCCCAATAAGACTCTCAATGTGAGTGTGCAAGAAGAAATCATCTTGTAA 1245 0.4185 MENSEKVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEEREFALYVSSISNGLKLPVRYLKEDKPRGSAGGLYYFRDIIMEDSPSHIFLLNCDVCCNFPLPAMLDAHKRYGGMGTMLVIKVSAESANQFGELVADPTTNELLHYTEKPETFVSNLINCGVYVFTPDIFTAIDDVYINREGRANLRRLSSFDTLQSATRTIPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSELYLAQFRYTSPDLLASGDGNKSATVSGDVYIHPSAKVHPSAKIGPNVSISANVRVGAGVRLSGCIILDDVEIKENAFVTNSIIGWKSSLGRWSHVQADGNYDARLGTTILGEAVTVEDEVVVFNCIVLPNKTLNVSVQEEIIL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0254 414 CDD M1P_guanylylT_A_like_N 9 273 - -
Pvu4g0254 414 Gene3D Hexapeptide repeat proteins 286 411 - -
Pvu4g0254 414 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 5 414 - -
Pvu4g0254 414 Pfam Nucleotidyl transferase 9 211 IPR005835 GO:0009058|GO:0016779
Pvu4g0254 414 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 276 IPR029044 -
Pvu4g0254 414 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 5 414 - -
Pvu4g0254 414 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 356 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0254 Pvu-Chr4 2288953 2294095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0254 19 354 Eukaryotic Initiation Factors Gene Family AT2G34970 21.316 2.56e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0254 K00966 - gmx:100782402 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0254 4 2288953 2294095 Pvu4g0254 4 2288953 2294095 ECH