Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0233 ATGGCATCAGGCGGAACCGAAGCCTTTCCCGATTTGGGTGAACACTGCCAGCACCGCGATTGCCACCAGCTCGATTTTCTTCCTTTCACCTGCTACGGTTGCCAAAAGGTGTTTTGTTTGGAGCACAGATCCTACAAGTCCCACGCGTGCACGAACTCCGATCACAATAGCAGAAAAGTGGTTGTCTGCGAAACGTGTTCCATGTCCATTGAGACCACCGGCTATGTTGGACAGGACGAGGAGGCAATCTTGGAGAAGCACCTCAAGTCTGGTAACTGTGATCCCACCAAGAAGAAGAAGCCCATTTGCCCTGTCAAGCGCTGCAAGGAGGTTTTGACTTTCTCCAACACCAGCAGCTGTAAAACTTGCCACATGAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGTAGCAGAGGAGTTTCAGCTTCTTCCTCATCCCCTGCTGCTAATGGTGGATGGAAGAATCGGTTTTTGGCTGCTTTAGTTTCAAGGACTGCACAGGAATGTGCCAAAACTGGTGCAACTCGTTCAACCTCTCCTCCTAGCACTCCTTCTGTGAAGGCCTATTGA 579 0.5078 MASGGTEAFPDLGEHCQHRDCHQLDFLPFTCYGCQKVFCLEHRSYKSHACTNSDHNSRKVVVCETCSMSIETTGYVGQDEEAILEKHLKSGNCDPTKKKKPICPVKRCKEVLTFSNTSSCKTCHMKVCLKHRFPADHACSRGVSASSSSPAANGGWKNRFLAALVSRTAQECAKTGATRSTSPPSTPSVKAY* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0233 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 177 - -
Pvu4g0233 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Pvu4g0233 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Pvu4g0233 192 SUPERFAMILY AN1-like Zinc finger 6 53 IPR035896 -
Pvu4g0233 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Pvu4g0233 192 Pfam AN1-like Zinc finger 103 140 IPR000058 GO:0008270
Pvu4g0233 192 SUPERFAMILY AN1-like Zinc finger 95 145 IPR035896 -
Pvu4g0233 192 MobiDBLite consensus disorder prediction 173 192 - -
Pvu4g0233 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Pvu4g0233 192 Gene3D - 2 67 IPR035896 -
Pvu4g0233 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Pvu4g0233 192 Gene3D - 78 157 IPR035896 -
Pvu4g0233 192 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0233 Pvu-Chr4 2111094 2112885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0233 1 172 C2H2 Transcription Factor Family AT3G28210 60.465 4.23e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0233 - - gmx:100500384 338.961