Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0232 ATGGAGATTCAACAAACGCTGAAGCTCACTATCCACAAGAAATGGCCATCATCGCCCAAGAAAACACCAAAAGATTCAGAACCAATAACCACCCCTGCAACTCCAAAGCTGAAATGGAAGAAAATCTTCTTTCACACCAAAACCAAACCCAAAATCCAAACCCCCCCAGAAGAGTTCCTCTGCCCCGTTTCCCGTTCCCTCATGTCCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGTAAAAATCTTAACTTTGCACCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAATCTCGCCCTTAAATCCGCCATCCTCAAGTGGTGCCACACCACCCACACACCCCCTCCTCTCCCCCATAACAACCTTGTACAGCAAACCTCAATCTCCCCAGACACCCCCAACACGAACCTCGTACAAACCTCGATCTCCCCGGACGTTGTTCCCACAGAAGATAAACTCTCCGACAGAGATCCGATCCTGGATTCCCTGGACGAAAACCCACCCTCGAGCAACCTCCGCCGCCACGCGGAAACCGAGGTGCCCATAAGACCGACACATCTGTACACGAGCTCCGAGGAATCCCTAGCCACAACCTCAGCTTCGACGCCGCCGTTTCAGCTCGCCACGCGCCCCAGTTGCTGCTACTACTCTTCCCCTTCCTCGTCAGAAATTGAACCCGCCGCAACCCCAGAAGAAGAAGAAATCATGGAGAAGCTCAAAAGCCCACAACAGAACATAATCGAGGAAGCGCTTCTCTCTCTGAGAAAACTCACCCGAATGAGAGAAGAAACCCGGGTCCAACTCTGCACCCCGCGGATACTCTCTGCGTTACGCTCCCTCGTTTTGTCGAAACATGTGAACGTTCAGGTGAACGCTTTGGCTTCAGTGGTGAACCTTTCTCTGGAGAAGAGTAACAAGGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTTGGATCCCCTGAGGCGCAGGAACACTGTGCGGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTTTGGGTGGTTTGGGTCCGTTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGCCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTAAGTATGGTTAAGTTGGGTCACATGACAGGTCGGGTTTTGTTGATTTTGGGAAACTTGGGTTCCGGGTCGGACGGACGGGCCGCGATGTTGGATGCTGGTGTTGTGGAGTATTTGATCGGGTTACTGAGTGGACCCGACTCGGCCACCGGGTCGGTTCGGGAAAGCTGTGTGGCGGTGATGTACGCGTTGAGTCACGGCGGCTTGAGGTTTAAGGCGGTTGCGAAGGCGGCGGGGCTGGTGGAGGTGTTGCAGAAGGTGGAGAAAGTGGGGAGTGAGAGGTGTAGGTATAAGGTGAGGAAGATTTTGGAGATGATGAGGGCCAAAGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTTGACTCAGGGCTGGGTTGCAGGACTCGGGGCCGACTCGGTGGCGGGTTGGACGAGTCAAGTGCTAACTCGGCCGAGTTTTGA 1689 0.5447 MEIQQTLKLTIHKKWPSSPKKTPKDSEPITTPATPKLKWKKIFFHTKTKPKIQTPPEEFLCPVSRSLMSDPVIVSSGHSFERSSVEACKNLNFAPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISPDTPNTNLVQTSISPDVVPTEDKLSDRDPILDSLDENPPSSNLRRHAETEVPIRPTHLYTSSEESLATTSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEIMEKLKSPQQNIIEEALLSLRKLTRMREETRVQLCTPRILSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVEYLIGLLSGPDSATGSVRESCVAVMYALSHGGLRFKAVAKAAGLVEVLQKVEKVGSERCRYKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGLDESSANSAEF* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0232 562 Pfam Armadillo/beta-catenin-like repeat 319 355 IPR000225 GO:0005515
Pvu4g0232 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 137 IPR013083 -
Pvu4g0232 562 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Pvu4g0232 562 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Pvu4g0232 562 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Pvu4g0232 562 SUPERFAMILY ARM repeat 249 517 IPR016024 -
Pvu4g0232 562 MobiDBLite consensus disorder prediction 1 33 - -
Pvu4g0232 562 MobiDBLite consensus disorder prediction 157 194 - -
Pvu4g0232 562 SUPERFAMILY RING/U-box 52 124 - -
Pvu4g0232 562 MobiDBLite consensus disorder prediction 163 194 - -
Pvu4g0232 562 SMART arm_5 275 315 IPR000225 GO:0005515
Pvu4g0232 562 SMART arm_5 316 356 IPR000225 GO:0005515
Pvu4g0232 562 SMART arm_5 437 480 IPR000225 GO:0005515
Pvu4g0232 562 SMART arm_5 357 397 IPR000225 GO:0005515
Pvu4g0232 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Pvu4g0232 562 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 36 551 - -
Pvu4g0232 562 PANTHER U BOX DOMAIN-CONTAINING 36 551 - -
Pvu4g0232 562 Gene3D - 243 519 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0232 Pvu-Chr4 2083576 2085264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0232 56 562 U-box Gene Family AT5G40140 56.008 6.67e-173 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0232 - - gmx:100798675 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0232 4 2083576 2085264 Pvu9g1877 9 26743223 26748586 ECH
Pvu4g0232 4 2083576 2085264 Pvu4g0232 4 2083576 2085264 ECH
Pvu4g0232 4 2083576 2085264 Pvu8g0461 8 3938078 3943711 PCT