Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0224 ATGCATGGGTGTGCTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTATCGTATGATAAACAAGAAAGTCCAAGTTTAGAAGTGCATTGGCTTTACCGACCTGCTGATTTGAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCGTTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAAGAAGTTAACCAGCTATTAGATAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCATTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGATTGAAGATGGAGACTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGCGCTGATAAAAAAATAGATTTACCTGGGCGGATAATGCTTGTCGATGTAATTGCACTTACAGACCGGTACGACTGTCTGGGTTGGTTTGTACAGCTCAGGGGTTTACCTGTGTTGGATGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGTGATGGGAATATGCCCAAAGAAAGTGATAAGTCTGTTGATGAATTTTTGTTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACCCACAAAAATGCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTAGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCGAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCTGAGTCTCCTCATGTTGGAAATAGGAAAACAGGGGGATCCTCTGATAACGTTGTGAAGAGCCCTGCTATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCCAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCTCAGTGGGCATGAACTCAAAAGATCAAAACAGTAAAGTCTTTGTTGGAGCTGCAACGGCAGATCTGCCTCTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCCAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCGAAGAGCTCCACTGCAGTGTCAATGAGTGCTAGTAAAATTCATGGTTGTGCATCTCGAACTCGCAAGTCAAGCAATGGTATCCACGGGCCTGGTGCAGTAGGTCAGAAGGAGCACAACTCTGCAAAAATTTCAACCAGAAATTCACCGACTGAGAAAGTATCACCAACTCGAGCATCCCATGAAAAATCAGTTGACCAGCCCCTTGCCGATCAAGGGAATAACCAGCGATTGATTCTCAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGCGGAGGCTCTTTTGAAGAACCAGCAACAACGAGCAGTAAAGCTTTGTCTCCTGCTGACCTGAATGATAATCAGGACAGAAGATTGAAAACTAAGACCGAGTGTTTGCTGACCCATGTGTCAAATATGATAAATGAATCTTGTGATGCTAATGAAGCTTTGATTGGTGATGAAAATAAGGGCACTCCAATAGTTGATGAGCGATGCAGGGCAATTGAAGATAGTGACAAGGTATTAGAAACATCAAAACCAACTAGTTTGCCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTGGTTGAAAGCTGTGTAAAATTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTTGCTACTGTGGCTGCGGGGGAAATATCCAGATCGGAAAATGCATCACCTGTGGCATCCCCCGAGAGAAAGTCGTCTCCTGCAGGAGATGAACAATGCTCTGGCAATGATTTAAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATCGCAGATAAAAAATGAATTGAGGCATCCTGCCATGACAGTGTCACGTGATTTTCCAGGGGATGGTGAAACCATTTCATCTTCCCACGATACTCGTATAAATGTCTCCTCTACAGATTTGTTACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACCATAGAAGATGCTTCTGTAACTATACTGACTCCTAAAAAGGAGAGTAATGCAGACGCTGGAGTTTCAGACTCTAAACTAAAGCCAAGGGCTTCCTCTTTTGATGATGATCAGAAGGTTGATCACATGAAAGAGGAGATCATTGAGAATGAGAAAATGTTGGTTTCAAAACCTTTTACCAATGTTGAGTCAGAAAACGAATCAGGTGAAAAGAAGCCTGATTTAACTTCAAGTGTGGATAATGAGAACCATATTAGTGTGGAGAAAGCAACAGGTACAGGAATACTAGTGCAAAAGACCTCTCCAACTGCTGAAAACTCTGAGTCTATATATTTAAAAAAGGAGTTACCTGCCTCTGGTAATGCTTTAATGGTACCCATGGATGAAAATGCTGATGACATGAAGTCAGTAGTGATTGAGCCTGACGAAAGACGAAGGGAGCAGGATTCTTCTTCTCCAGATGATTCTAATGATTGTGCTGAAGATAATATGGGCAGAAAAGAGGCCATTGGTCAGTGTTCTGGTTCATCATCAGTTCAGCCAGATTTACAAACAATGTCTAGGAAAGAAAATGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAATCCGTCTGAAGTTTCAGGAGAGAGGCATGCATACTCTGCATCTGGTGCTGATGCAACTGTAAAACTTGACTTTGATTTAAATGAAGGCTTTCCTTTTGATGACGCAAGCCAAGGGGAGATTGCCAGACAGGAAGATCCTATCACATCATCTGCAGTCCATGTTCCTTGCCCGTTGCCTTTTCCCATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACAGTGGCATCTGCTGCTAAAGGGCCGGTTATTCCACCAGAAAACCCATTGAGGATGAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCTACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTACTTCTGTTGAAGTCACTTCTATCAAACAAAGCCGTGCTCCCTTAGATTTTGACTTAAATGTGGCAGATGAAAGATGTTTTGAGGATGTTGGTTCACATGGTTCTTTAGAATCTGGACCACATGATCGTAGTGTGGGACTCGATCTTGATTTAAATAGAGTCGATGACACTCCTGAAATTGGTTCTTTCTCTATAAGCAAACTGGATATTCCTTCTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAATGGGCTTGGTCTTGAAGAAGTTGGTAGTGAAGTCCCAGCACGTAGTCAGCTGATGAAAAACAGTGTACCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGGAATTATTCTGCATGGTTTCCTCCAGGAAATTCCTATCCTGCAATTACTGTCCCGCCACTTCTGCCTGGTAGAGGGGAGCAGAGTTATGTCAGTGGTGCCGGGGCACAAAGAATAATGGGTCCTACAGGTAGCAGTCCTTTCGGTCCTGAAATCTACAGGGGATCAGTGCTTTCATCCTCTCCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGGTCAACTGCATTTATGGATTCCTCAAATGTGGGCGGGCTATGTTTTCCTACCATGACTTCACAGCCAGTTGGGCCTGGTGGTGTTGTTTCATCCACGTATCCCCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTGGCAGATACAGAACGGAGGGATGATAGATTGTCTTCAGGATTGAGGCAAATGTCTGTCCCAAACACACAAGCCTCGATTGAGGACCACTTGAAGATGCTTCAGATGGCAGGAGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAGAGATTCGGTTATAAGCAACACTCACGGCAATAG 4680 0.438 MHGCAGDQWKHNRHMWPVPANATTDGRKIRAGDCALFKPPRDSPPFIGIIRKLSYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKESDKSVDEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSPAIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTSVGMNSKDQNSKVFVGAATADLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCREDAKSSTAVSMSASKIHGCASRTRKSSNGIHGPGAVGQKEHNSAKISTRNSPTEKVSPTRASHEKSVDQPLADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKALSPADLNDNQDRRLKTKTECLLTHVSNMINESCDANEALIGDENKGTPIVDERCRAIEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSSPAGDEQCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSSQIKNELRHPAMTVSRDFPGDGETISSSHDTRINVSSTDLLQNVEGPCLRPETIEDASVTILTPKKESNADAGVSDSKLKPRASSFDDDQKVDHMKEEIIENEKMLVSKPFTNVESENESGEKKPDLTSSVDNENHISVEKATGTGILVQKTSPTAENSESIYLKKELPASGNALMVPMDENADDMKSVVIEPDERRREQDSSSPDDSNDCAEDNMGRKEAIGQCSGSSSVQPDLQTMSRKENEVSKSCEQKLDANPSEVSGERHAYSASGADATVKLDFDLNEGFPFDDASQGEIARQEDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRMKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDITSVEVTSIKQSRAPLDFDLNVADERCFEDVGSHGSLESGPHDRSVGLDLDLNRVDDTPEIGSFSISKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGLGLEEVGSEVPARSQLMKNSVPFPSAVHSTRTNNAEYGNYSAWFPPGNSYPAITVPPLLPGRGEQSYVSGAGAQRIMGPTGSSPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMTSQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDDRLSSGLRQMSVPNTQASIEDHLKMLQMAGAALKRKEPDGGWDAERFGYKQHSRQ* 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0224 1559 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1557 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 762 794 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 174 201 - -
Pvu4g0224 1559 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 255 391 IPR035441 -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 762 784 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 930 981 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1012 1084 - -
Pvu4g0224 1559 Gene3D - 20 242 IPR043151 -
Pvu4g0224 1559 SMART BAH_4 27 142 IPR001025 GO:0003682
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 497 646 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 416 474 - -
Pvu4g0224 1559 ProSiteProfiles TFIIS N-terminal domain profile. 304 390 IPR017923 -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 202 232 - -
Pvu4g0224 1559 SMART TFS2_5 310 389 IPR003617 GO:0005634
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 497 553 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 594 640 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1479 1494 - -
Pvu4g0224 1559 Pfam TFIIS helical bundle-like domain 338 387 IPR017923 -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 162 235 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 937 951 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1043 1060 - -
Pvu4g0224 1559 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 292 401 IPR035441 -
Pvu4g0224 1559 ProSiteProfiles BAH domain profile. 27 142 IPR001025 GO:0003682
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 889 911 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1479 1522 - -
Pvu4g0224 1559 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1557 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1540 1559 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1538 1559 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 952 981 - -
Pvu4g0224 1559 CDD TFIIS_I 312 388 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1181 1200 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 393 408 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 566 582 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 1012 1038 - -
Pvu4g0224 1559 MobiDBLite consensus disorder prediction 390 474 - -
Pvu4g0224 1559 Pfam BAH domain 29 134 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0224 Pvu-Chr4 1982589 1989731 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu4g0224 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0224 - - gmx:112998769 2479.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0224 4 1982589 1989731 Pvu9g1870 9 26621633 26628943 ECH
Pvu4g0224 4 1982589 1989731 Pvu4g0224 4 1982589 1989731 ECH