Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0214 ATGTCAGAAAGCATGTATCCTAGGTTGTTGGTTTTGGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCATCTTCTTCACCTCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAGTCACCTTCAACAACAACAACAACATCTGGCACTAGAATTAGTCCTGCTGTTCTCTTCATCATAGTGGTTCTTGCTGTTCTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCCAGAAATCTCCACATCTGATGCTCTCCAGAGGCAGCTGCAGCAGCTCTTCCATCTCCACGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTCTTTCAGTACAAGGAGATTGTTGGGTTGAAAGAGCCTTTTGACTGTGCTGTGTGTTTGTGTGAGTTTTCTGAGAAGGACAAGCTCAGGCTGTTGCCTGTGTGCAGCCATGCTTTTCACATCAGTTGCATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACGCTTCTCACTCAGGGATTTTCTATTGAGAACCCTATGTTTGATTTTGATGGTCTGAGGGAGGATGAAGGGTGTCCTTGTAATGGGGAGAGTGGATTCAGTACTGGGCAGAAAACAGTAGTGGTTGAAGAAAGTGTGGAGAAAGGGGTTTTTCCTGTGAGGCTTGGGAAGTTCAAGAAGCTGAATGTGGAAGGTGGGGAGAGAGAAGTGGGAGAGACAAGTAGCAGCAATTTGGATGCAAGAAGGTGCTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCTGACCTCAGAGTGGCCTTAAACCATGAAATTGACAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACATGAAGATGGGAAGGTTTCAGTGGAGGGAGATGTGGAAGCAAAGAAGATCAGTAGTGTGAGTAAAGGAGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAGATTACCTACTTCTTTGGATGCTCAAATGGGCATGCCAATGCCATCATTTATGAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGCCATGA 1182 0.4569 MSESMYPRLLVLDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSPPYPPGAAFHKESPSTTTTTSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPMFDFDGLREDEGCPCNGESGFSTGQKTVVVEESVEKGVFPVRLGKFKKLNVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHEIDKGQVTRLTKGMEHEDGKVSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGRLPTSLDAQMGMPMPSFMNTDFQRRRETEGP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0214 393 MobiDBLite consensus disorder prediction 43 66 - -
Pvu4g0214 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 373 - -
Pvu4g0214 393 Pfam Ring finger domain 161 204 IPR001841 -
Pvu4g0214 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 210 IPR013083 -
Pvu4g0214 393 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Pvu4g0214 393 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 19 373 - -
Pvu4g0214 393 CDD RING-H2_PA-TM-RING 161 204 - -
Pvu4g0214 393 SMART ring_2 162 203 IPR001841 -
Pvu4g0214 393 MobiDBLite consensus disorder prediction 368 393 - -
Pvu4g0214 393 SUPERFAMILY RING/U-box 141 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0214 Pvu-Chr4 1903153 1905842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0214 60 363 C3H Transcription Factor Family AT2G18650 41.317 6.11e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0214 - - gmx:100806337 636.721