Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0207 ATGACAGTTATTGTAACAGTGGTGCTAATATTTGTGGGATTTGTGGTCCTGGTCATATTTCATGTTTGTATTTCGGAGAGACTCTCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGCAGAAGCATGTCCATAGATGACTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAAGTGCAGGTTGTTACCTATTTGCAAGCACAGTTTTCATGCTCAGTGTATGGACACATGGCTTCTTAAGACACCCTTATGTCCAATTTGCAGGTCCACTGCTCATTCTCATAGTGAAAACCAAGTTATAGGTAACAGTGACCACTTGGTTGCACCAAATAGTGTGTCTAGGGAGAGCCAAACTGCCACAAGAAGTCAGCAACATGACAATATGGTGGTATTGGTACAGCTGAGAGAAAGCCGAGAAAATGGTCCATCAACAAATGTTGTCATAGAAAATCCAACATTAGGAAGTCTGAACTTGGTGAGAGAGGAGTAG 561 0.4367 MTVIVTVVLIFVGFVVLVIFHVCISERLSRRGSMVERGANGGRSMSIDDLEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPICKHSFHAQCMDTWLLKTPLCPICRSTAHSHSENQVIGNSDHLVAPNSVSRESQTATRSQQHDNMVVLVQLRESRENGPSTNVVIENPTLGSLNLVREE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0207 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Pvu4g0207 186 SMART ring_2 70 111 IPR001841 -
Pvu4g0207 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 122 IPR013083 -
Pvu4g0207 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 127 - -
Pvu4g0207 186 SUPERFAMILY RING/U-box 69 122 - -
Pvu4g0207 186 Pfam Ring finger domain 69 112 IPR001841 -
Pvu4g0207 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0207 Pvu-Chr4 1844907 1845968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0207 50 113 C3H Transcription Factor Family AT2G18650 50.769 6.26e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0207 - K15692 gmx:102667575 290.426