LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g0148	ATGCCTGGTGGGAGCAGCAAAAGGAGGATACATTTTAGCAAACTGTACAGTTTTTCTTGTTTGAAATCTCGTTTCAGAGATGGTCATTCCCAAATTGGGCAGAAGGGGTACTCCAGGGTTGTGTACTGCAATGATCCGGATAACCCTGAAGCAGTTCAGTTGAGTTATGGAGGCAATTATGTTTCAACAACCAAGTATACAGCTTTTAATTTCATCCCCAAGTCTCTGTTTGAGCAGTTCAGAAGGGTTGCAAATATCTACTTTCTCATTGTTGCGTGTGTTTCATTTAGTCCATTGGCACCTTTCACTGCTCTAAGTATTGTTGCTCCATTGCTGGTTGTGATTGGAGCTACAATGGCCAAGGAAGCTGTGGAAGATTGGAGGAGGAGAAAACAGGATATAGAGGCAAATAACAGAAAGGTTCAGGTATATGGTAGAAATTATACATTTACCGAGACTAGATGGAAGAAACTCCGTGTTGGTGATATCATTAAAGTGTACAAGGATGAATACTTTCCTGCTGATCTTCTTTTGCTTTCATCAAGCCCCGGTGATGGGGTTTGTTATGTCGAGACTATGAATCTTGATGGAGAAACTAATCTGAAATTAAAGCATGCTTTGGAGGTGACAACTCATCTTCATGATGAAAAGTCTCTCCAAAAGTTTAGGGCTGTGGTTAAATGTGAGGATCCTAATGAAAATCTGTACTCATTTATTGGAACTTTACAACATGATGGTAAAGAATATCCTCTTTCCTTGCAGCAGATCCTGTTAAGAGATTCTAAGTTGAAAAACACTGATTTTATCTATGGCATTGTTGTCTTTACTGGCCATGATACGAAAGTTATGCAGAATTCCACCGATCCTCCGTCCAAAAGAAGCAAAATTGAGAGGAAAATGGATAAGATAATATACATCCTCTTCAGTACCTTGGTTTTGATATCCTTTATTGGTTCTGTCTTTTTTGGTATTGAGACCAAAAAGGATATTAGTGGTGGAAGGTATAAAAGATGGTATCTTCATCCAGACGATGCAACGGTGTTCTATGATCCGAGAAGGGCAACACTTGCTGCTATTCTTCATTTTTTGACTGCCATTATGTTGTATGGATATCTAATTCCGATATCACTTTATGTGTCCATAGAAATTGTGAAAGTTCTGCAGAGCATTTTCATTAACCAAGACCAGGAAATGTATTATGAAGAATCAGATAGGCCAGCTCATGCACGCACGTCTAATTTGAATGAGGAACTTGGTCAGGTTGATACCATATTGAGTGACAAAACTGGTACTTTGACATGTAACTCAATGGAGTTTGTCAAATGTTCAATAGGGGGCATTCCGTATGGTCGTGGTATGACAGAAGTAGAGAAAGCACTTGCTAGGAGAGGAAAAGGTGGGGAATCTGATGTTGATGGTGGATCCTCTGATTTCTTGGGCCAGAATAATGAGGCAAGTGACTCTCTGCATCCAATTAAGGGCTTTAATTTTAGAGATGAGCGCATAGTGAATGGGCAATGGGTTAATGAACCATGTTCAGACTTCATACAGAAATTCTTTCTAGTTTTAGCTATTTGTCACACAGCTATTCCAGATGAAGATAAAGAATCTGGAGAAATTTCCTATGAAGCCGAGTCACCAGATGAAGCAGCTTTTGTCATAGCTGCAAGGGAGCTTGGTTTCGAGTTTTTTGAAAGGAAACAAACAAGCATATCATTGCACGAATTGAATTATGAAAGTGGAAAAAAGGTTGACAGAGTGTACCAGCTTCTACATGTGTTAGAGTTCAGCAGTTCCCGCAAAAGAATGTCAGTGATAGTGAGGAATGAGGAAAATCAATTATTGCTCCTATGCAAGGGTGCAGACAGTGTAATGTTTGAAAGGCTCTCACAGCATGGAAGACAGTTTGAGGTTGAAACCAGAGATCATATCAAAAGGTACGCCGAGGCTGGTTTAAGAACCCTTGTAGTCACATACCGTGAACTTGATGAAGAAGAATATAAGTTATGGGACAAGGAGTTTTCAAAGGTCAAATCTTCTGTAACAGAAGACCGAGATGCACTGGTGGATGCAGCTGCTGACAAGATGGAAAGAGATTTGATACTTCTTGGTGCTACTGCAGTTGAGGATAGACTGCAAAAAGGGGTTCCTGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCAGTCAACATAGGGTATGCTTGCAGTTTACTTAGACAAGACATGAAACAGATAGTGATCACTCTTGATTCCTCAGATATCTTATACTTGGAAAAGCAAGGGGACAAGCAGGCTCTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAGCAAATTGGAGAAGGAATCTCACAAATTAACTCTGCCAAAGAGAGTTCTAATGCAAATAAAGGAACGTCTTCTGGGTTTGGCTTGATAATCGATGGAAAGTCCTTGGATTATTCTCTTAACAAGAATTTGGAGAAGTCCTTCTTTGAGCTTGCCATTAATTGTGCTTCTGTCATATGTTGCCGATCTTCACCCAAACAAAAAGCTCGTGTGAGTACTATGG	2587	0.4001	MPGGSSKRRIHFSKLYSFSCLKSRFRDGHSQIGQKGYSRVVYCNDPDNPEAVQLSYGGNYVSTTKYTAFNFIPKSLFEQFRRVANIYFLIVACVSFSPLAPFTALSIVAPLLVVIGATMAKEAVEDWRRRKQDIEANNRKVQVYGRNYTFTETRWKKLRVGDIIKVYKDEYFPADLLLLSSSPGDGVCYVETMNLDGETNLKLKHALEVTTHLHDEKSLQKFRAVVKCEDPNENLYSFIGTLQHDGKEYPLSLQQILLRDSKLKNTDFIYGIVVFTGHDTKVMQNSTDPPSKRSKIERKMDKIIYILFSTLVLISFIGSVFFGIETKKDISGGRYKRWYLHPDDATVFYDPRRATLAAILHFLTAIMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYYEESDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIPYGRGMTEVEKALARRGKGGESDVDGGSSDFLGQNNEASDSLHPIKGFNFRDERIVNGQWVNEPCSDFIQKFFLVLAICHTAIPDEDKESGEISYEAESPDEAAFVIAARELGFEFFERKQTSISLHELNYESGKKVDRVYQLLHVLEFSSSRKRMSVIVRNEENQLLLLCKGADSVMFERLSQHGRQFEVETRDHIKRYAEAGLRTLVVTYRELDEEEYKLWDKEFSKVKSSVTEDRDALVDAAADKMERDLILLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRQDMKQIVITLDSSDILYLEKQGDKQALAKASLESIKKQIGEGISQINSAKESSNANKGTSSGFGLIIDGKSLDYSLNKNLEKSFFELAINCASVICCRSSPKQKARVSTM	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g0148	862	Pfam	E1-E2 ATPase	137	331	-	-
	Pvu4g0148	862	Gene3D	-	112	288	-	-
	Pvu4g0148	862	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	4	861	-	-
	Pvu4g0148	862	CDD	P-type_ATPase_APLT_Dnf-like	58	862	-	-
	Pvu4g0148	862	SUPERFAMILY	Calcium ATPase, transmembrane domain M	50	522	IPR023298	-
	Pvu4g0148	862	PANTHER	PHOSPHOLIPID-TRANSPORTING ATPASE	4	861	-	-
	Pvu4g0148	862	Gene3D	-	703	862	IPR023214	-
	Pvu4g0148	862	Gene3D	-	546	702	IPR023299	GO:0000166
	Pvu4g0148	862	SUPERFAMILY	Calcium ATPase, transduction domain A	144	285	IPR008250	-
	Pvu4g0148	862	TIGRFAM	ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase	56	861	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016021\|GO:0140326
	Pvu4g0148	862	Pfam	Cation transport ATPase (P-type)	526	631	-	-
	Pvu4g0148	862	SUPERFAMILY	HAD-like	413	764	IPR036412	-
	Pvu4g0148	862	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	502	668	IPR023299	GO:0000166
	Pvu4g0148	862	Pfam	Phospholipid-translocating ATPase N-terminal	41	104	IPR032631	-
	Pvu4g0148	862	ProSitePatterns	E1-E2 ATPases phosphorylation site.	427	433	IPR018303	-
	Pvu4g0148	862	Coils	Coil	117	137	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g0148	Pvu-Chr4	1307928	1313466	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g0148	1	862	Primary Pumps ATPases	AT1G68710	63.761	0.0	1154

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g0148	K01530		-	gmx:100817020	1543.48