Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0145 ATGGCAGCAATGGTGCATCACAGGGAACCGGCGAAGCTGCGGTGGGGCGAGCTGGAGGAGGACGACGGCGAGGATCTGGATTTCCTCCTCCCGCCGCGACAGGTCGTAGGGCCCGACGACAACGGCATAAAGAGGGTCATCGAGTACAAGTTCGACGACGACGGCAACAAGGTCAAGATCACCACCACGTCGCGCACCCGCAAGCTCGCCAACGCGCGTCTCAGCAAACGCGCCGTCGAGCGTCGCTCCTGGCCCAAGTTCGGCGACGCCGTCCACGAAGACGTCGGCAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTCCTCGAACGCCCCAAGCCTCTTGGCTCCAAAACGGAGGAGCCCAAGACTGCTGGGGACCCCTTGGCTCAATTCCAGAAAGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACCTCAAGGTGTCCATACAAGGATCTGGCCCCGCCATCTGAGGGATTCGTGGATAAGCCTGCAACATTAGATGCTGCAGCGGCAACAGGTGGTGCAACCAAGGGAGCCTACGTGCCTCCGGGTATGAGGGCGGGGGCTGAGAGGAGCACCGGCTCCGATATGCGGCGCAGGAACGATGAGAACTCTGTGAGGGTAACCAACCTCTCTGAAGACACAAGAGAGCCAGATTTGCTGGAGCTGTTCCGTTCTTTTGGTCCAGTAAGCAGAGTTTATGTTGCCATTGATCAGAAGACAACCATGAGCAGGGGCTTTGGCTTTGTTAACTTTGTTAACAGGGAAGATGCTCAAACAGCTATCAGCAAACTCAATGGGTATGGTTACGACAATCTCATTCTTAGAGTTGAATGGGCAACACCAAGGGCAACCTAG 882 0.5692 MAAMVHHREPAKLRWGELEEDDGEDLDFLLPPRQVVGPDDNGIKRVIEYKFDDDGNKVKITTTSRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGSKTEEPKTAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPATLDAAAATGGATKGAYVPPGMRAGAERSTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRSFGPVSRVYVAIDQKTTMSRGFGFVNFVNREDAQTAISKLNGYGYDNLILRVEWATPRAT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0145 293 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 12 292 IPR017334 GO:0003743|GO:0005737|GO:0005852
Pvu4g0145 293 Gene3D - 186 293 IPR012677 -
Pvu4g0145 293 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 10 292 - -
Pvu4g0145 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 280 IPR000504 GO:0003723
Pvu4g0145 293 PIRSF Transl_init_eIF-3_RNA-bind 4 293 IPR017334 GO:0003743|GO:0005737|GO:0005852
Pvu4g0145 293 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 10 292 - -
Pvu4g0145 293 Pfam Eukaryotic translation initiation factor 3 subunit G 34 160 IPR024675 -
Pvu4g0145 293 CDD RRM_eIF3G_like 213 288 IPR034240 -
Pvu4g0145 293 MobiDBLite consensus disorder prediction 182 210 - -
Pvu4g0145 293 CDD eIF3G 41 159 IPR024675 -
Pvu4g0145 293 SUPERFAMILY RNA-binding domain, RBD 198 291 IPR035979 GO:0003676
Pvu4g0145 293 SMART rrm1_1 213 286 IPR000504 GO:0003723
Pvu4g0145 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0145 Pvu-Chr4 1248343 1250260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0145 7 293 Eukaryotic Initiation Factors Gene Family AT3G11400 66.038 4.60e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0145 K03248 - gmx:100818725 541.576