Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0141 ATGATTTCCACGTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTTCTCTCTCTCTTATGTTCATATGTACAAAATAATGGACAAAAAACCATGCAACTCATCATCATCTCATGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCCAACCATGGTGAAGGTGTTTGGAACTCTCTAGCAAAAGCTTCTGGTCTTAAACGAACTGGGAAAAGTTGTCGACTTCGTTGGCTAAACTATCTTCGTCCTGATGTTAGAAGAGGGAACATTACAACTGAAGAACAGCTTTTGATCTTTGAGCTTCATGCAAAGTGGGGCAATAGGTGGTCCAAAATTGCAAAGCATCTTCCTGGAAGAACTGACAATGAGATTAAGAACTTTTGGAGAACCAGGATTCAGAAACACATGAAGCAAGCTGAGAATTCACAACAACAGGGTAATAATAGTAATATTTCAGAGACAAATGATCATCATCATCATCAAGCAAGCTCTAGCACAAGCCTAGTATCCAACATGGCATTGCAAATTGAGACTTACTCTGCACCCTCATATCAAGAAAATTTGGAGTCATTTCCAACACAGTTTCCTACAATCACTGATCAATCAAGTTCATGTACCAATCACAACATCAACAGCAACCATAACTATTGGAACATAGAGGATTTCTGGCCCATGCAATTACTCAATGGGGATTGA 726 0.3898 MISTSSSSSSFSSSSFSLSYVHMYKIMDKKPCNSSSSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIFELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQQQGNNSNISETNDHHHHQASSSTSLVSNMALQIETYSAPSYQENLESFPTQFPTITDQSSSCTNHNINSNHNYWNIEDFWPMQLLNGD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0141 241 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Pvu4g0141 241 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 27 238 - -
Pvu4g0141 241 Gene3D - 99 174 - -
Pvu4g0141 241 SMART sant 43 93 IPR001005 -
Pvu4g0141 241 SMART sant 96 144 IPR001005 -
Pvu4g0141 241 MobiDBLite consensus disorder prediction 145 177 - -
Pvu4g0141 241 CDD SANT 101 140 IPR001005 -
Pvu4g0141 241 CDD SANT 46 91 IPR001005 -
Pvu4g0141 241 Pfam Myb-like DNA-binding domain 97 140 IPR001005 -
Pvu4g0141 241 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Pvu4g0141 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Pvu4g0141 241 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Pvu4g0141 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 91 IPR017930 -
Pvu4g0141 241 MobiDBLite consensus disorder prediction 147 162 - -
Pvu4g0141 241 Gene3D - 44 96 - -
Pvu4g0141 241 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Pvu4g0141 241 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 27 238 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0141 Pvu-Chr4 1193789 1197679 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0141 29 241 MYB Transcription Factor Family AT3G01530 58.216 8.86e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0141 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0141 K09422 - gmx:100305972 337.421