Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0137 ATGGCTGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACCCTCCCTAAACCATGGAAGGGACTTGTGGATGGCAAGACTGGGTATCTTTACTATTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGGCCATCGACCTCAGCTGCCCTGCCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATGTGTCTCAAGGGTCGCAACGTGGTCATAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAATGAAGCTGGATCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGGAACAAATGCTGCTGCCAGTGTTAACTATCCTGTCAAAGGTCATGGGGCATCGGAAGCTGCAGCTGTACTATCTCCCGAGTCTTATCGAAGTCGACATGAAATAACTGTGACTGGAGACAACGTGCCTCCACCTCTTGCATCATTTGGGTCTACAGGCTTTCCACCGGAGCTTCTGAGAGAGGTACAAAATGCTGGTTTCGCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGTTCAGGAAAAACCTTGGGATATTTAATTCCTGCATTTATTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTTCTTTCACCAACAAGGGAGTTGGCAACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCGTCGAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCGAAGGGTCCTCAACTCAGAGACATTGACCGTGGAGCAGATATTGTAGTAGCCACACCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCAGCAGGTCTCTTATCTGGTACTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTATACTGCAACGTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTAGACGAGCTTGTTGCCAACAAGTCCATTACTCAGCATATTGAAGTATTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGTTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATTTGACACGTCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTCCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCACGGGGACTTGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGGGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAGACCAGAAAGTTCCTCCAGAACTTCGTGATATGTCGTTACGTGGTGGTGGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGTGGTGATTCTGGATATGGTGGAAGGAATAATGACCCAGGATACGGTGGAAGGGGTGACTATGGAGGATATGGTGGAAGAGGTAGTGATTCAAATTATGGAGGTAGGGGGAATGCTACTGGCAGAGGAGGCCGTGGTTTTGACTATGACTCTCAAAGGAATGATCGGGGTGGGAGTCCAGAGAAGGGATCTAGATGGAGTGATCGGTACAAAGGCGTGAACCGTGAACGTAGTCGTAGCCCTGACAGGGCCGCATTACCTCAACATTCCCAAAGCAGCTTTCACAAGTCAATGATGGAACGTGGTGGATGGGGTGGTGATAGTGATCGCAATAAGAACAGCTCTAATAATAGAGATCGAAGCCGCAGTCCTAGCCCCTATAGACAGGAGAGGAGCCAACGATCCCCAGTTCAGAGTTTTCATCGATCCATGATGGGATCCCCACGGCAACGTCCACGCAGTCCTAGGTCTAACAATACTCCTTCAAAAGACTGGTACAATGGAGAGGTGGAGGAAGGCATGATTCCAGAGGAAGAAGGAATCATAGGTCCCCAGGCTCAGGGTGGTGGCGGCGATTAG 2274 0.4789 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYYWNPETNVTQYERPSTSAALPKSSSVPSSSVQVQHVSQGSQRGHSPDFSDRYDRNGSGGSNEAGSRNNQSSKGGSYSSHSVPTGTNAAASVNYPVKGHGASEAAAVLSPESYRSRHEITVTGDNVPPPLASFGSTGFPPELLREVQNAGFAAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMYTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHIEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGADQKVPPELRDMSLRGGGGMGRSRRWGSGGRGGRGDSGYGGRNNDPGYGGRGDYGGYGGRGSDSNYGGRGNATGRGGRGFDYDSQRNDRGGSPEKGSRWSDRYKGVNRERSRSPDRAALPQHSQSSFHKSMMERGGWGGDSDRNKNSSNNRDRSRSPSPYRQERSQRSPVQSFHRSMMGSPRQRPRSPRSNNTPSKDWYNGEVEEGMIPEEEGIIGPQAQGGGGD* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0137 757 MobiDBLite consensus disorder prediction 693 730 - -
Pvu4g0137 757 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Pvu4g0137 757 Gene3D - 17 65 - -
Pvu4g0137 757 MobiDBLite consensus disorder prediction 540 757 - -
Pvu4g0137 757 MobiDBLite consensus disorder prediction 667 692 - -
Pvu4g0137 757 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Pvu4g0137 757 MobiDBLite consensus disorder prediction 91 127 - -
Pvu4g0137 757 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 120 639 - -
Pvu4g0137 757 MobiDBLite consensus disorder prediction 1 27 - -
Pvu4g0137 757 MobiDBLite consensus disorder prediction 49 129 - -
Pvu4g0137 757 Pfam WW domain 21 51 IPR001202 GO:0005515
Pvu4g0137 757 MobiDBLite consensus disorder prediction 613 648 - -
Pvu4g0137 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Pvu4g0137 757 CDD WW 22 51 IPR001202 GO:0005515
Pvu4g0137 757 SMART ultradead3 186 389 IPR014001 -
Pvu4g0137 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Pvu4g0137 757 Gene3D - 377 547 IPR027417 -
Pvu4g0137 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Pvu4g0137 757 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 639 - -
Pvu4g0137 757 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Pvu4g0137 757 SMART helicmild6 426 506 IPR001650 -
Pvu4g0137 757 SMART ww_5 20 53 IPR001202 GO:0005515
Pvu4g0137 757 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Pvu4g0137 757 MobiDBLite consensus disorder prediction 49 82 - -
Pvu4g0137 757 Gene3D - 143 376 IPR027417 -
Pvu4g0137 757 CDD SF2_C_DEAD 386 515 - -
Pvu4g0137 757 SUPERFAMILY WW domain 12 53 IPR036020 GO:0005515
Pvu4g0137 757 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Pvu4g0137 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0137 Pvu-Chr4 1139583 1144016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0137 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.247 1.05e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0137 K12823 - gmx:100816455 1098.19