Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0135 ATGTTCCACCAAACCAAAACCTTCCACCTTTTTCATTTCCACCCCATGAACATGGCTACTTGCATCCCTATCTCTACCATGGAGGGTCTTTCCAACCCTACCACCCCGCTTGGGATATCCACCCCTTGTGGTGGAGGATCTTCCCTCATAGGCTTTGCTATTGATTGCCATGCCCATCCTTTGACTTTGGAACTAAACAAAACAATGATGGATGCTTTGCATGGCTACCAAAATAACACACTCATATGTGAATTAATTCATCCACCTCTAGCTTCATTTTCCATATCATCACCATTTCCATTTTCACTCTTTAATAACTGTGAATTAATGGTGACAAGTGATGGTCAATGGAACTCTAATCAAAAGGAAAAAAATGATACCATAATCAAAGGGCAATATTGGACTCCTGAAGAAGATAGGGTTCTTGTGGAAATGGTGAATCAATTTGGGCCTACCAAATGGTCACAAATTGCAAAGGCACTACAGGGCAGAATTGGGAAGCAATGTCGAGAAAGATGGAACAATCAACTTCGACCAAACATTAGGAGGGGAACATGGAGCTTGGAGGAAGACATGATTCTGATCAAAGGGCACCAAGAATTTGGAAACAAATGGTCAAAGATTGCAAAGAAACTAGGTGGTAGGACTGAGAATGCTGTGAAGAACCATTGGAATGCAACCATGAGACGCCAAAACTGCAAGAAGAACAACCATGGTCACTACAAAGGCTCAATGCTCCATGCCTATGTCAAATGGGTCATTGCATCATCTCCAGAATCTGCAAAAAAAGTTCCCAAAAAATCCTCAGACAACATGAACAAGAAGAAGAAGGAGGTGGAGAGATGCAATTGTGATGAGCTAGTTCTTTTCTTGAGCTAG 879 0.4187 MFHQTKTFHLFHFHPMNMATCIPISTMEGLSNPTTPLGISTPCGGGSSLIGFAIDCHAHPLTLELNKTMMDALHGYQNNTLICELIHPPLASFSISSPFPFSLFNNCELMVTSDGQWNSNQKEKNDTIIKGQYWTPEEDRVLVEMVNQFGPTKWSQIAKALQGRIGKQCRERWNNQLRPNIRRGTWSLEEDMILIKGHQEFGNKWSKIAKKLGGRTENAVKNHWNATMRRQNCKKNNHGHYKGSMLHAYVKWVIASSPESAKKVPKKSSDNMNKKKKEVERCNCDELVLFLS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0135 292 CDD SANT 134 175 IPR001005 -
Pvu4g0135 292 Pfam Myb-like DNA-binding domain 134 191 - -
Pvu4g0135 292 CDD SANT 185 225 IPR001005 -
Pvu4g0135 292 SUPERFAMILY Homeodomain-like 130 224 IPR009057 -
Pvu4g0135 292 ProSiteProfiles Myb-like domain profile. 134 177 IPR001005 -
Pvu4g0135 292 PANTHER MYB PROTEIN-RELATED 116 268 - -
Pvu4g0135 292 SMART sant 130 179 IPR001005 -
Pvu4g0135 292 SMART sant 182 230 IPR001005 -
Pvu4g0135 292 PANTHER MYB DOMAIN PROTEIN 100-RELATED 116 268 - -
Pvu4g0135 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 181 IPR017930 -
Pvu4g0135 292 Gene3D - 132 182 - -
Pvu4g0135 292 Gene3D - 184 248 - -
Pvu4g0135 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 232 IPR017930 -
Pvu4g0135 292 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0135 Pvu-Chr4 1126270 1128453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0135 124 251 MYB Transcription Factor Family AT4G18770 58.915 3.74e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0135 Myb_DNA-bind_6 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0135 K09422 - vra:111242362 300.441