Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0121 ATGGCTTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGGAGGAAGTGCATGCCAGATTGTCTTTTTGCTCCATATTTTCCCCCAGAGGAGCCTCAGAAGTTTGTGAATGTGCACAAGATCTTTGGTGCAAGCAATGTGAGCAAGATTTTGAACGAGGTGCAACCCTATCAGAGAGAGGACACTGTGAACTCTCTAGCCTATGAAGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCCATTTCAGTGCTCCAAAGACAAGTTCTTAAGCTCCAGAAGGAACTTGATGCTACAAATGTTGATTTGATCCGCTACAACACTTGCAATGAAATGCCAAATAGTAGTAATCATCATGAAGGAAGAAGCAAGATTATTAATGATGATGATGATTTATATTATGCTTCTTCTTCTACTAATTGGAACAATAATCCTTGTGATGAAAATGGGTACCCCAGAGGAGATATATAA 492 0.4065 MASSSYSNSPCAACKFLRRKCMPDCLFAPYFPPEEPQKFVNVHKIFGASNVSKILNEVQPYQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNVDLIRYNTCNEMPNSSNHHEGRSKIINDDDDLYYASSSTNWNNNPCDENGYPRGDI* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0121 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 131 - -
Pvu4g0121 163 Coils Coil 89 109 - -
Pvu4g0121 163 MobiDBLite consensus disorder prediction 144 163 - -
Pvu4g0121 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 131 - -
Pvu4g0121 163 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Pvu4g0121 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0121 Pvu-Chr4 999365 1001208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0121 4 116 AS2 family AT3G27650 81.416 4.30e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu4g0121 LOB 2.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0121 - - gmx:100788656 267.314