Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0095 ATGGCTGCAGAACTTGTTGGTGGTGCTCTTCTTTCCGCCTTTCTTCAGGTTGCATTCGACAGGCTCGCTTCTCCTCAACTTCTAGACTTCTTTCGTAGAAGAAAACTTGATGAGAAACTGCTCGCCAATTTGAACATCATGCTGCATTTCATCAATGCTCTCGCTGATGATGCTGAACTAAAGCAGTTCACAGAATCATACGTCAAAGAATGGCTTGTCGATGTTAAAGAGGCTGTCTTTGATGCAGAGGATCTGTTGGGTGAAATAGACTATGAACTCACCAGATGCCAAGTGGAAGCTCAATACGAACCTCAAACCTTTACTCACAAGAAAAATAAGAAAATTGAATCAGGGATGAAAGAAGTCCTGGAGAAACTAGAATATCTTGCAAACCAAAAGGGTGATCTTGGTTTGAAGGAGGGTACTTATTCTGATGATAATGATAGATCAGGCAGTAGAGTGTCACAGAAATTGCCATCATCTTCTTTGGTGGTTGAAAGTGTTATTTACGGTAGAGATGCTGAGAAAGATATAATCATTAATTGGCTCACATCTGAAACTGACAATCCTAACCAGCCATCAATACTTTCCATTGTGGGCATGGGTGGCTTGGGTAAGACCACCCTGGCCCAGCATGTGTACAGTGATCCTAAGATCGAAGATGCAAAATTTGATATCAAAGCATGGGTTTGTGTTTCTGATCATTTTCATGTTTTGACCGTGACAAGAACAATTCTGGAGGCAATCACAAATCAAAAAGATGACAGTGAGAACCTAGAAATGGTTCACAAAAAACTGAAAGAAAAATTGTTAGGAAAGAGATTTCTTCTTGTTTTGGATGATGTTTGGAACGAAAAACGAGAAGAATGGGAAGCTGTGCGAACTTCTCTTAGATATGGGGCTCCAGGAAGTAGAATTATTGTCACAACTCGTGATGAGAAAGTTGCTTCTAACATGAGGTCTGAAGTGCATCTTCTAAAGCAATTAGGAGAGGATGAATGCTGGAAAGTTTTTGAAAATCATGCATTAAAAGATGGTGATTTTGAATTGAATGATGAGTTAATGAAGGTTGGTAGAAGGATAGTCAAGAAGTGCAAGGGATTACCTCTAGCTCTGAAAACAATTGGATGTCTTTTACGCACAAAGTCATCCATTTCAGATTGGAAGAACATATTGGAAAGTGATATATGGGAGTTACCAAAAGAACACAATGAAATTATTCCTGCGTTATTTTTGAGCTATCACTATCTTCCTTCTCATCTTAAAAGGTGTTTTGCTTATTGTGCCTTATTCCCCAAAGATTATGAGTTTGTGAAGGAGGAGTTAATATTGATGTGGATGACGCAAAATTTTCTATTGTGTCCAGAACAAATTAGACTTCCAGAAGAAGTTGGTGAAGAGTACTTCAATGATCTACTGTCAAGGTGTTTTTTTAACCAATCAAGCGTCGTAGGGT 1456 0.3887 MAAELVGGALLSAFLQVAFDRLASPQLLDFFRRRKLDEKLLANLNIMLHFINALADDAELKQFTESYVKEWLVDVKEAVFDAEDLLGEIDYELTRCQVEAQYEPQTFTHKKNKKIESGMKEVLEKLEYLANQKGDLGLKEGTYSDDNDRSGSRVSQKLPSSSLVVESVIYGRDAEKDIIINWLTSETDNPNQPSILSIVGMGGLGKTTLAQHVYSDPKIEDAKFDIKAWVCVSDHFHVLTVTRTILEAITNQKDDSENLEMVHKKLKEKLLGKRFLLVLDDVWNEKREEWEAVRTSLRYGAPGSRIIVTTRDEKVASNMRSEVHLLKQLGEDECWKVFENHALKDGDFELNDELMKVGRRIVKKCKGLPLALKTIGCLLRTKSSISDWKNILESDIWELPKEHNEIIPALFLSYHYLPSHLKRCFAYCALFPKDYEFVKEELILMWMTQNFLLCPEQIRLPEEVGEEYFNDLLSRCFFNQSSVVG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0095 485 PRINTS Disease resistance protein signature 195 210 - -
Pvu4g0095 485 PRINTS Disease resistance protein signature 269 283 - -
Pvu4g0095 485 PRINTS Disease resistance protein signature 365 379 - -
Pvu4g0095 485 Gene3D - 413 483 IPR036388 -
Pvu4g0095 485 Gene3D - 24 134 - -
Pvu4g0095 485 PANTHER DISEASE RESISTANCE PROTEIN RP 13 482 IPR044974 GO:0006952
Pvu4g0095 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 428 IPR027417 -
Pvu4g0095 485 Pfam Rx N-terminal domain 11 105 IPR041118 -
Pvu4g0095 485 Coils Coil 249 269 - -
Pvu4g0095 485 Pfam NB-ARC domain 174 415 IPR002182 GO:0043531
Pvu4g0095 485 Gene3D - 329 412 IPR042197 -
Pvu4g0095 485 PANTHER OS05G0414200 PROTEIN 13 482 - -
Pvu4g0095 485 Gene3D - 151 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0095 Pvu-Chr4 827402 828899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0095 196 376 WRKY Transcription Factor Family AT5G45050 28.108 2.51e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0095 - - pvu:PHAVU_004G012800g 813.527