Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0093 ATGGCAGCAGAACTTGTTGGTGGTGCTCTTCTTTCCGCCTTTCTTCAGGTTGCATTAGAAAGGCTCGCTTCTCCTCAACTTCTAGACTTCTTTCGTAGAAGAAAACTTGATGAGAAACTGCTCGACAATTTGAACATCAAGCTGTATTCCATAAATGCTCTCGCTGATGATGCTGAACTAAAGCAGCTCACAGATCCACACGTCAATGCATGGCTTGTTGCTGTCAAAGAGGCTGTCTTTGATGCAGAGGATCTGTTGGGTGAAATTGACTATGAACTCACCAGAGGCCAAGTCGAAGCTCCATACGAACCTCAAACCTTTACTTCCAAGGTATCAGATTTCGTCGACTCTACTTTGACTTCATTTAACAAGAAAATTGAATCAGAGATGAAAGAAGTCCTCGAGAAACTAGAATATCTTGCAAAAGAAAAGGATGCTCTTGGTTTGAAAAGGGGTACTTATTCTGATGATAATGATAGATCAGGCAGTAGAGTGTCACAGAAATTGCCATCATCTTCTTTGGTGGCTGAAAGTGTTATTTATGGGAGAGATGCTGACAAAGGTATAATCATTAATTGGCTCATATCTGAAACTGACAATCCTAACCAGCCATCAATACTTTCCATTGTGGGCATGGGTGGGTTGGGTAAGACCACCCTGGCCCAGCATGTATTCAGTGATCCTAAGATCGAAGATGCAAAATTTGATATCAAAGCCTGGGTTTGTGTTTCTGATCATTTTCATGTTTTGACCGTGACAAGAACAATTCTTGAGGCAATCACAAATCAAAAAGATGACAGTGGGAACCTAGAAATGGTTCACAAAAAACTGAAAGAAAAATTGTTAGGAAAGAGATTTCTTCTTGTTTTGGATGATGTTTGGAACGAAAGACCAGCAGAATGGGAAGCTGTGCGAACTCCTCTTAGCTACGGGGCTCCAAGAAGTAGAATTCTTGTCACAACTCGCAATGAGAAAGTTGCTTCTAGCATGAGGTCTGAAGTGCATCTTCTAAAGCAATTAGGAGAGGATGAATGCTGGAAAGTTTTTGAAAATCATGCATTAAAAGATGGTGATCTTGAATTGAATGATGAGTTAATGAAGGTTGGTAGAAGAATAGTTGAGAAGTGCAAGGGATTACCTCTAGCTCTCAAAACAATTGGATGTGTTTTGAGCACAAAGTCATCCATTTCAGATTGGAAGAACATATTGGAAA 1213 0.4023 MAAELVGGALLSAFLQVALERLASPQLLDFFRRRKLDEKLLDNLNIKLYSINALADDAELKQLTDPHVNAWLVAVKEAVFDAEDLLGEIDYELTRGQVEAPYEPQTFTSKVSDFVDSTLTSFNKKIESEMKEVLEKLEYLAKEKDALGLKRGTYSDDNDRSGSRVSQKLPSSSLVAESVIYGRDADKGIIINWLISETDNPNQPSILSIVGMGGLGKTTLAQHVFSDPKIEDAKFDIKAWVCVSDHFHVLTVTRTILEAITNQKDDSGNLEMVHKKLKEKLLGKRFLLVLDDVWNERPAEWEAVRTPLSYGAPRSRILVTTRNEKVASSMRSEVHLLKQLGEDECWKVFENHALKDGDLELNDELMKVGRRIVEKCKGLPLALKTIGCVLSTKSSISDWKNILE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0093 404 PANTHER OS05G0414200 PROTEIN 14 400 - -
Pvu4g0093 404 Gene3D - 161 339 IPR027417 -
Pvu4g0093 404 PRINTS Disease resistance protein signature 206 221 - -
Pvu4g0093 404 PRINTS Disease resistance protein signature 280 294 - -
Pvu4g0093 404 PRINTS Disease resistance protein signature 376 390 - -
Pvu4g0093 404 PANTHER DISEASE RESISTANCE PROTEIN RP 14 400 IPR044974 GO:0006952
Pvu4g0093 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 404 IPR027417 -
Pvu4g0093 404 Pfam Rx N-terminal domain 11 102 IPR041118 -
Pvu4g0093 404 Gene3D - 340 404 IPR042197 -
Pvu4g0093 404 Pfam NB-ARC domain 187 403 IPR002182 GO:0043531
Pvu4g0093 404 Coils Coil 123 143 - -
Pvu4g0093 404 Gene3D - 16 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0093 Pvu-Chr4 794324 795536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0093 207 387 WRKY Transcription Factor Family AT5G45050 29.032 4.00e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0093 - - pvu:PHAVU_L0044001g 693.73