Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0067 ATGGAATCACCCGGTAACGACCAATTGGTGGGTGCCGCTGACCCCAACGACGTCGTTGTACCCTTCTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCACAATTTATCAAGCACTTTGGGAAATATGGTGAGATTACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAACCTCGTGGATTTGGGTTTATAACCTATGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGACACTCATGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACTCGCTATGGTGAAGTGAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAATTCTGCACCTCCATCATCCAAGCGTTACAACGACTCAAGGTCTTCATACAGCAGTGCTGGATACGGAGATGCCTATGATGGATTTGGTGGCAGTTTTGGAGTAGGGGGTGGATATAGGTCAGGTGGTGCTTATGGTGGCGGTAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCGATGGGGCCGTATAGAGGAGATCCCTCCCTCGGGTATGCTGGTCGTTATGGTGGAAGCTTTAGTAGAGGGTATGATCTCGGTGGGTACGGTGGAGCTAGTGAGAATTATGGGGCGTATGGTGGAGGTGGTGGTTCTTCTGGTGGTGCTAGTGCCGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAACCTAGCAGGTGGATATGGAGGGTCTAGTGGAGGTGCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1125 0.4844 MESPGNDQLVGAADPNDVVVPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSAGYGDAYDGFGGSFGVGGGYRSGGAYGGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGASENYGAYGGGGGSSGGASAGAGAYQSGYDGNLAGGYGGSSGGAFYGSSRGGYGAGRYHPYGR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0067 374 Gene3D - 42 121 IPR012677 -
Pvu4g0067 374 Gene3D - 130 212 IPR012677 -
Pvu4g0067 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Pvu4g0067 374 MobiDBLite consensus disorder prediction 205 226 - -
Pvu4g0067 374 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Pvu4g0067 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Pvu4g0067 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Pvu4g0067 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Pvu4g0067 374 SUPERFAMILY RNA-binding domain, RBD 122 218 IPR035979 GO:0003676
Pvu4g0067 374 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 3 374 - -
Pvu4g0067 374 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 374 - -
Pvu4g0067 374 SMART rrm1_1 131 204 IPR000504 GO:0003723
Pvu4g0067 374 SMART rrm1_1 43 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0067 Pvu-Chr4 523208 526632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0067 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 5.90e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0067 K12741 K14314 gmx:100793209 495.352