LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g0066	ATGGAGTCTTCTGTTAATGGAGTTGATTCCTTGTCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATCATGACCCTCTTCCTTCTGGGACTCCCCTACCTTCGCGGCCTCCTTTGAGAGCATCTAGAAACTATGATGGTGGTCATCAAACTAAGGCCATCCACCATCACAACAGCCATGTAATTAATCAAAAGCATTCCCATCAAGAGGGCAAAAACTTGAAGCAAGAAGGGTTGCCAACAAAATTGTCCAGCAAGCAGCCACCACTTGATGATTCCAAGGGTTGTGAGCCAAATGGTGTGTTAGAATCTGAGAAGAAACGTGTAGTTGATAATCATGGAAAGAACTACTCTCAGCCAGAGGCTACTTTCTGTGCAAGTCCTCAGAATAGTTTCTATTCAGCCACTGTTTACTCAGAAGCCAAAGAGAGTTTCACCAACACCGAAGTCAGCGAGTGTGCTAGTGTTGACAAGTCATGTGAGAGTGAAGTGGCGAATTCCAGTGATTTTAATGAGAGCAGGAAGACAAGCATATGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTTTTGTATAAACCTCACAAGGCAAATGACATAAGATGGGAAGCGATTCAAGCGGTTCGAACCAGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTGGGGTGTGGAGACATAGGGAGTGTGTATCTAGCTGAACTGAGTGGCACAAGAACTTCTTTTGCCATGAAGGTCATGAACAAGACCGAGCTGGCAAACCGCAAGAAGCTCCTAAGGGCTCAGACAGAGAGAGAGATATTGCAGTCCTTAGATCATCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAAATTTTTTCCTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCCCTCAGGCAAAGACAACCAGGGAAGTATTTTTCAGAGCATGCCGTCAGGTTTTATGTGGCAGAAGTTCTCCTTTCTTTGGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGACTTTGATCTCTCTCTAAGGTGCAGTGTCAGTCCAACTCTAGTGAAGTCATCAAACAACTTGCAGACCAAAAGCTCAGGATACTGCGTTCAGCCTTCCTGCATTGAGCCAACATGTGTGATGCAGCCGGACTGCATTAAACCGTCGTGCTTCACGCCGCGCTTTTTGTCCGGAAAATCCAAGAAAGACAAAAAGTCCAAACCAAAGAATGACATGCATAACCAGGTGACCCCTCTTCCTGAGCTGATTGCCGAGCCAACAAATGCAAGGTCAATGTCCTTTGTTGGAACACACGAGTACTTGGCACCAGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGACTGGTGGACATTTGGGATATTCCTGTATGAACTTCTGTTTGGTAGAACACCCTTCAAAGGTTCAGCCAATCGTGCAACTCTGTTCAATGTAATTGGTCAGCCTCTAAGGTTTCCAGAATCTCCAACTGTTAGCTTTGCTGCCAGGGACTTGATCAGAGGGTTGCTTGTGAAAGAGCCTCAGCATCGTCTCGCCTACAGACGTGGTGCCACAGAGATCAAACAACATCCATTCTTTCAGAATGTTAACTGGGCACTCATCCGTTGTGCCACTCCTCCAGAGGTTCCAAGGCAAGTTATCAATCTTCCTCAAACAGAGAAAGATCTTGGTGTGAAACCTTCTGGTAATTATTTAGACATTGATTTCTTTTGA	1830	0.4552	MESSVNGVDSLSEVQNSVSGVHHHDPLPSGTPLPSRPPLRASRNYDGGHQTKAIHHHNSHVINQKHSHQEGKNLKQEGLPTKLSSKQPPLDDSKGCEPNGVLESEKKRVVDNHGKNYSQPEATFCASPQNSFYSATVYSEAKESFTNTEVSECASVDKSCESEVANSSDFNESRKTSICRASTGSDASDESSTSSLSSVLYKPHKANDIRWEAIQAVRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVKSSNNLQTKSSGYCVQPSCIEPTCVMQPDCIKPSCFTPRFLSGKSKKDKKSKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCATPPEVPRQVINLPQTEKDLGVKPSGNYLDIDFF*	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g0066	609	MobiDBLite	consensus disorder prediction	429	448	-	-
	Pvu4g0066	609	Pfam	Protein kinase domain	230	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu4g0066	609	Pfam	Protein kinase domain	462	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu4g0066	609	SUPERFAMILY	Protein kinase-like (PK-like)	204	587	IPR011009	-
	Pvu4g0066	609	ProSiteProfiles	Protein kinase domain profile.	229	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu4g0066	609	PANTHER	SERINE/THREONINE-PROTEIN KINASE D6PKL3	84	609	-	-
	Pvu4g0066	609	Gene3D	Transferase(Phosphotransferase) domain 1	313	382	-	-
	Pvu4g0066	609	MobiDBLite	consensus disorder prediction	1	51	-	-
	Pvu4g0066	609	MobiDBLite	consensus disorder prediction	79	98	-	-
	Pvu4g0066	609	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	350	362	IPR008271	GO:0004672\|GO:0006468
	Pvu4g0066	609	SMART	serkin_6	229	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu4g0066	609	PANTHER	FLIPPASE KINASE 1-RELATED	84	609	-	-
	Pvu4g0066	609	Gene3D	Phosphorylase Kinase; domain 1	227	312	-	-
	Pvu4g0066	609	MobiDBLite	consensus disorder prediction	1	19	-	-
	Pvu4g0066	609	CDD	STKc_phototropin_like	227	583	-	-
	Pvu4g0066	609	Gene3D	Transferase(Phosphotransferase) domain 1	459	583	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g0066	Pvu-Chr4	513775	516924	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g0066	159	609	AGC Kinase Gene Family	AT5G47750	73.987	0.0	703

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Pvu4g0066		Pkinase	1.1e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g0066	K08286		-	gmx:100810909	1048.88