LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g0041	ATGCTGAAACCCACTTCTCTTTCTCTATCCAACATTTCATCTTTTTTCTTCTTCCATTCCCAACCCATGCCCTCCACGAAGCTCGGATTCTTCTTCTGCCATTGTTACAGACTCTTTCCAACGCTTTCTTCTTCTTCCTCCTTTCCCTTTTCACGCCCAAGACCTCTCTCCACAACCCCATATCCTCTCCAATATGAGCTCATCATCAATCGTCCAGCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCGGAACCCGACGACCCCACTTCCGAGACTCGCCCCCAACTCGACAAGGCGCAGAGGAAGTACTACAACAAGCGCAGGAAGAGGATGTACGGCTCCGATTCCGACCAAGACGAGGCGGGGCGCCGTGATGAGGCGTTTGTGGAGTTGAAGCCCGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGACCAATCGCTTGACAAGGCCTTTCTCCAACCGGGGCAGTCGAATGTGAATGCTGCAAATGTTAATGTTGATGCAGATGGAAAGGGCGAGGGTAGGAAGAAAGGTGTTGGTGTTGATGAGAAGTTGGTGTTTTTCGAGGGGAAAGAGAAGGGCGAGGAGGGTGAGCGTGGAAGTAGAGAAGTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTGGCAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCTGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTACGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACCCTTGACCCGATGGCTACTGGTTTATTGATTGTATGTGTTGGCAAGGCAACGAAACTGGTAGACAGATATCAAGGAATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAGGAATGCTTTGTCTTTCTGTGGTGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTTCAGTTTGACACGGAGCGCAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGACAGCTGTGCTCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAGTATTCAGCTGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAATTATCTCTAA	1515	0.4752	MLKPTSLSLSNISSFFFFHSQPMPSTKLGFFFCHCYRLFPTLSSSSSFPFSRPRPLSTTPYPLQYELIINRPAYPRPPTVRPIDSPEPDDPTSETRPQLDKAQRKYYNKRRKRMYGSDSDQDEAGRRDEAFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNVNAANVNVDADGKGEGRKKGVGVDEKLVFFEGKEKGEEGERGSREVKEKKVEEFFKGLKKVPGSGKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKNYL*	505

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g0041	504	Pfam	TruB family pseudouridylate synthase (N terminal domain)	306	456	IPR002501	GO:0006396
	Pvu4g0041	504	MobiDBLite	consensus disorder prediction	112	127	-	-
	Pvu4g0041	504	Hamap	tRNA pseudouridine synthase B [truB].	284	504	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Pvu4g0041	504	Pfam	tRNA pseudouridylate synthase B C-terminal domain	457	500	IPR032819	-
	Pvu4g0041	504	CDD	PseudoU_synth_EcTruB	287	498	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Pvu4g0041	504	SUPERFAMILY	Pseudouridine synthase	286	499	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Pvu4g0041	504	PANTHER	TRNA-PSEUDOURIDINE SYNTHASE	261	502	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Pvu4g0041	504	TIGRFAM	TruB: tRNA pseudouridine(55) synthase	286	495	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Pvu4g0041	504	MobiDBLite	consensus disorder prediction	87	104	-	-
	Pvu4g0041	504	Gene3D	Pseudouridine synthase	281	503	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g0041	Pvu-Chr4	326922	331529	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g0041	287	478	NAC Transcription Factor Family	AT3G57150	33.333	1.63e-20	92.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g0041	K03177		-	gmx:100793939	708.753

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