Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0041 ATGCTGAAACCCACTTCTCTTTCTCTATCCAACATTTCATCTTTTTTCTTCTTCCATTCCCAACCCATGCCCTCCACGAAGCTCGGATTCTTCTTCTGCCATTGTTACAGACTCTTTCCAACGCTTTCTTCTTCTTCCTCCTTTCCCTTTTCACGCCCAAGACCTCTCTCCACAACCCCATATCCTCTCCAATATGAGCTCATCATCAATCGTCCAGCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCGGAACCCGACGACCCCACTTCCGAGACTCGCCCCCAACTCGACAAGGCGCAGAGGAAGTACTACAACAAGCGCAGGAAGAGGATGTACGGCTCCGATTCCGACCAAGACGAGGCGGGGCGCCGTGATGAGGCGTTTGTGGAGTTGAAGCCCGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGACCAATCGCTTGACAAGGCCTTTCTCCAACCGGGGCAGTCGAATGTGAATGCTGCAAATGTTAATGTTGATGCAGATGGAAAGGGCGAGGGTAGGAAGAAAGGTGTTGGTGTTGATGAGAAGTTGGTGTTTTTCGAGGGGAAAGAGAAGGGCGAGGAGGGTGAGCGTGGAAGTAGAGAAGTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTGGCAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCTGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTACGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACCCTTGACCCGATGGCTACTGGTTTATTGATTGTATGTGTTGGCAAGGCAACGAAACTGGTAGACAGATATCAAGGAATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAGGAATGCTTTGTCTTTCTGTGGTGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTTCAGTTTGACACGGAGCGCAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGACAGCTGTGCTCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAGTATTCAGCTGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAATTATCTCTAA 1515 0.4752 MLKPTSLSLSNISSFFFFHSQPMPSTKLGFFFCHCYRLFPTLSSSSSFPFSRPRPLSTTPYPLQYELIINRPAYPRPPTVRPIDSPEPDDPTSETRPQLDKAQRKYYNKRRKRMYGSDSDQDEAGRRDEAFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNVNAANVNVDADGKGEGRKKGVGVDEKLVFFEGKEKGEEGERGSREVKEKKVEEFFKGLKKVPGSGKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKNYL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0041 504 Pfam TruB family pseudouridylate synthase (N terminal domain) 306 456 IPR002501 GO:0006396
Pvu4g0041 504 MobiDBLite consensus disorder prediction 112 127 - -
Pvu4g0041 504 Hamap tRNA pseudouridine synthase B [truB]. 284 504 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu4g0041 504 Pfam tRNA pseudouridylate synthase B C-terminal domain 457 500 IPR032819 -
Pvu4g0041 504 CDD PseudoU_synth_EcTruB 287 498 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu4g0041 504 SUPERFAMILY Pseudouridine synthase 286 499 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu4g0041 504 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 261 502 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu4g0041 504 TIGRFAM TruB: tRNA pseudouridine(55) synthase 286 495 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu4g0041 504 MobiDBLite consensus disorder prediction 87 104 - -
Pvu4g0041 504 Gene3D Pseudouridine synthase 281 503 - -
Pvu4g0041 504 MobiDBLite consensus disorder prediction 73 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0041 Pvu-Chr4 326922 331529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0041 287 478 NAC Transcription Factor Family AT3G57150 33.333 1.63e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0041 K03177 - gmx:100793939 708.753