Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0020 ATGGACTCACCACAAACCACCGCCAAGCTCCGCCTCATGTGCAGCCACGGCGGCCACATACTCCCCCGTCCCGGCACCCACTCCCTCTTCTACGCCGGCGGCGACACCCGCATCCTCTCCATCCACCGCCACACCCTCGCCACCCTCTCCTCCTTCCGCTCCCACCTCTCCACACTCCTCTCTCTCAAATACCCCTTCACTCTCAAGTACCACCTCCCCCACCTCCCCCTCCACTCCCTCATCTCCCTCTCCTCCGACCAAGACCTCCACACCCTCGTCGACCACCACCGCCGCTCCTCTTCCCGCATCAGACTCTTCGTCTTCCCCACTTTCACCCCTCTTCTTCCCACACCCCCCTCCTCCTCCCATTCTCTTCCAAGTGATACCAGTGTTTCCAGCACCATGTTGCACCGGCAGAATATATGTTACCAGGACCCTGTGCTTTCTGCTTCGGAGGCAAAACTCGAGAGGCCAAATTTTCAGTTTGTGCAATCTGCTACGCACTTTTCACCTCTTCCTGCTCCCCTGAACTCATCACCGTCTTCCCACCATGTTTACCACCCACCTCCTCCTTCAAACCATCTGCTTTATCAAACCAATCTATACCTTGTGCCTGTTACTTTGCCTGTCACCGCCTCTACCCAAGCATCCATGAATCTAGATGTTTCATCTGCAAATTCACACCCCGAAACTGCAGCATTTGTTCACGTCCCTTGCAACCAAAACCAGGAACCACAAACCCATCAATCTCAATCTCAGAATATATCTATGGAATCTCCCGAGAGTGGAAATGGACTTGACAACAACCTTACACGTGATCAGATATACAAATCTCAGCCCCCACCTCCGGCATTGCCTTCTTAA 864 0.5405 MDSPQTTAKLRLMCSHGGHILPRPGTHSLFYAGGDTRILSIHRHTLATLSSFRSHLSTLLSLKYPFTLKYHLPHLPLHSLISLSSDQDLHTLVDHHRRSSSRIRLFVFPTFTPLLPTPPSSSHSLPSDTSVSSTMLHRQNICYQDPVLSASEAKLERPNFQFVQSATHFSPLPAPLNSSPSSHHVYHPPPPSNHLLYQTNLYLVPVTLPVTASTQASMNLDVSSANSHPETAAFVHVPCNQNQEPQTHQSQSQNISMESPESGNGLDNNLTRDQIYKSQPPPPALPS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0020 287 MobiDBLite consensus disorder prediction 242 287 - -
Pvu4g0020 287 SMART PB1_new 24 110 IPR000270 GO:0005515
Pvu4g0020 287 MobiDBLite consensus disorder prediction 242 276 - -
Pvu4g0020 287 Pfam PB1 domain 31 109 IPR000270 GO:0005515
Pvu4g0020 287 PANTHER OS05G0427100 PROTEIN-RELATED 3 120 - -
Pvu4g0020 287 PANTHER OS05G0427100 PROTEIN-RELATED 168 286 - -
Pvu4g0020 287 SUPERFAMILY CAD & PB1 domains 27 109 - -
Pvu4g0020 287 CDD PB1_UP2 13 108 - -
Pvu4g0020 287 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 168 286 - -
Pvu4g0020 287 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0020 Pvu-Chr4 229072 230222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0020 3 108 MAP Kinase Kinase Kinase AT1G79570 36.607 3.75e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0020 - - pvu:PHAVU_004G002000g 513.842