Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3053 ATGAACTGCACCGTTCATTCCGCGCTCTTCGCCTTTCTCCTTCCCTCTCTATGGGAGATCAAAGTTACCGTCGCTGCCTCCGTCTTCGTTGTACTCGCCTATCGCTTCTTCGCCGCCCGAACCGAACACTTCAATAACGATCCGTCGCTTCCCGACAATTCCCCCGCCGTCGACATCGCCGACGACACGATAGGGCAGCCTAAAGTTGATTCTCAAGGCAGTTCAGCGTACCTGCTCAAGTTAGAACTGTTGGCTGCTAAGAATCTTGTTGGTGCAAACTTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCGGTTGAAAGTGAAGGTCAGACCGGTGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTTCATATAAGAACAATAAAACTATCTGGAAATGTTTCCAGGGTAAGTGGCTATGGAGGAGCCAACCCTCGAAGAAGGATCCCGCCCTTGGAAAGACAGGGCCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAGACAATATTTTCTCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCTTGGCACATTTGTTTTCACTCCAATGTGTTCTCAAAGCAAATGAAGGTGCTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGCGTCCCTCCTTTGGGAAGCCCTGATGGTAGAGTCAGATATATGTTCGCATCCTTTTGGAACAGGAATCATGCATTCAGAAATCTCCAGCGTGCAGCAAAGAATTTCTATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCAGCGTGCACATAGCAGTTCCGTAAGAGGAAATAAGCTGCTGGATAAGGCTCCTATAGAAAGCATGTCAAAAACTGGAAAACTTCCACATTTTATCAAAGAAGAGGCTTTAGTTGGTATATACAATGAGCTTTTTCCCTGCACAGCTGAGCAGTTTTTTAACTTATTGTTAAATGATGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGCGATGGGCCAGTGGCATGTAGCAGATGAATATGATGGTCAAGTACGAGAGATAACCTTCAGATCACTGTGTAACAGCCCTATGTGCCCTCCAGATACAGCCATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAGAAAAACCTGGTGTTTGAGACCGTGCAGCAGGCACATGATGTTCCATTTGGATCTTATTTTGAGGTACACTGTAAATGGAGCTTGGAGACAATTAATGAAAGCTCATGTACTCTGGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGAGGTCATGTTAGATGTTGCTCGATCGTTTATAAAATCAAATACTTCTGATGGCGAGAATGTTGAGGTCTCTTCGGCCCCAGCTGGTGTCTTGGAAAGCTAA 1761 0.4395 MNCTVHSALFAFLLPSLWEIKVTVAASVFVVLAYRFFAARTEHFNNDPSLPDNSPAVDIADDTIGQPKVDSQGSSAYLLKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIRTIKLSGNVSRVSGYGGANPRRRIPPLERQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFYEMLEAEKKENAESEQRAHSSSVRGNKLLDKAPIESMSKTGKLPHFIKEEALVGIYNELFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLAMGQWHVADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINESSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSFIKSNTSDGENVEVSSAPAGVLES* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3053 586 Pfam VAD1 Analog of StAR-related lipid transfer domain 402 547 IPR031968 -
Pvu3g3053 586 ProSiteProfiles C2 domain profile. 60 175 IPR000008 -
Pvu3g3053 586 Pfam GRAM domain 229 297 IPR004182 -
Pvu3g3053 586 SMART C2_3c 78 174 IPR000008 -
Pvu3g3053 586 Coils Coil 337 364 - -
Pvu3g3053 586 Gene3D - 227 346 IPR011993 -
Pvu3g3053 586 ProSiteProfiles VASt domain profile. 398 568 IPR031968 -
Pvu3g3053 586 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 578 - -
Pvu3g3053 586 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 188 IPR035892 -
Pvu3g3053 586 Pfam C2 domain 79 174 IPR000008 -
Pvu3g3053 586 CDD C2 88 175 - -
Pvu3g3053 586 PRINTS C2 domain signature 94 106 IPR000008 -
Pvu3g3053 586 PRINTS C2 domain signature 118 131 IPR000008 -
Pvu3g3053 586 PRINTS C2 domain signature 139 147 IPR000008 -
Pvu3g3053 586 SMART gram2001c 226 292 IPR004182 -
Pvu3g3053 586 Gene3D C2 domain 64 192 IPR035892 -
Pvu3g3053 586 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 578 IPR044655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3053 Pvu-Chr3 52192002 52202160 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3053 66 163 C2H2 Transcription Factor Family AT4G21160 25.510 2.69e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3053 - - gmx:100789923 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3053 3 52192002 52202160 Pvu3g3053 3 52192002 52202160 ECH