Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3050 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAACGAAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACAAAGGAGAGGAAGGAGAAGATTGGGGAAAGAATAGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAGAGGACGCAATGGAGTACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATACCTTGAAACTTCAGCAGCAGCCAAAATGCAGGGTATGGATGCATGCAGCCTGAGGAGTGGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAAACTGCTACTTCACCAAAATTGGAGAAGGATGTCTCGCAATTTCATTGA 504 0.4306 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLEDAMEYIGFLHKQVKLLSAPYLETSAAAKMQGMDACSLRSGGLCLVPVSFTIGVAESNGADIWAPIKTATSPKLEKDVSQFH* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3050 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Pvu3g3050 167 SMART finulus 52 101 IPR011598 GO:0046983
Pvu3g3050 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 149 - -
Pvu3g3050 167 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 13 149 - -
Pvu3g3050 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 110 IPR036638 GO:0046983
Pvu3g3050 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Pvu3g3050 167 Gene3D - 43 117 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3050 Pvu-Chr3 52169511 52173817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3050 24 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.128 6.27e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3050 - - gmx:100809747 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3050 3 52169511 52173817 Pvu3g3050 3 52169511 52173817 ECH