Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3033 ATGTTCACCCTCATTACCCCCCGCCCGCCGCCCCCTCCCTCCCACCACCACCACCACAAACAGCCCGCCGCTTCCCCCGTCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTCTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTAGAGTTCTATACACGTCCGACGGCTGAGAAAGTTTTGCAGAACTATAATGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGATCTTCGGATGCTACTTCTGATCTCTCGATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGTTGCAAGAGACTTTTGCGGGCAGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGCGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCTATGAGAATAGGTGTTGCAACTCCGAAGAAAACTTATGGCTATCAACAACAATATTCTTCCCAAGCTGGTGGAGGGCACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCCGTGGGGAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCGAATGGAGGGCACTATGGTGGGCAGGGGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGTGCTTCCTGA 1092 0.489 MFTLITPRPPPPPSHHHHHKQPAASPVASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYTRPTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAGGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEDAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGGYGGHGFAVRQNQDLAMQPAAAAIQGAS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3033 363 MobiDBLite consensus disorder prediction 217 248 - -
Pvu3g3033 363 CDD RRM1_SECp43_like 35 115 - -
Pvu3g3033 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 114 IPR000504 GO:0003723
Pvu3g3033 363 CDD RRM2_SECp43_like 127 206 - -
Pvu3g3033 363 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 22 361 - -
Pvu3g3033 363 Gene3D - 226 347 IPR012677 -
Pvu3g3033 363 SMART rrm1_1 245 312 IPR000504 GO:0003723
Pvu3g3033 363 SMART rrm1_1 35 110 IPR000504 GO:0003723
Pvu3g3033 363 SMART rrm1_1 129 203 IPR000504 GO:0003723
Pvu3g3033 363 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 361 - -
Pvu3g3033 363 Gene3D - 33 113 IPR012677 -
Pvu3g3033 363 MobiDBLite consensus disorder prediction 1 28 - -
Pvu3g3033 363 CDD RRM3_NGR1_NAM8_like 243 314 - -
Pvu3g3033 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 316 IPR000504 GO:0003723
Pvu3g3033 363 Gene3D - 115 225 IPR012677 -
Pvu3g3033 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 309 IPR000504 GO:0003723
Pvu3g3033 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 199 IPR000504 GO:0003723
Pvu3g3033 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 103 IPR000504 GO:0003723
Pvu3g3033 363 SUPERFAMILY RNA-binding domain, RBD 235 341 IPR035979 GO:0003676
Pvu3g3033 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 207 IPR000504 GO:0003723
Pvu3g3033 363 SUPERFAMILY RNA-binding domain, RBD 32 208 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3033 Pvu-Chr3 52015510 52020461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3033 36 323 Eukaryotic Initiation Factors Gene Family AT4G34110 30.233 9.35e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3033 - - gmx:100814564 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3033 3 52015510 52020461 Pvu3g3033 3 52015510 52020461 ECH