Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3028 ATGGGAGTCTGCACATCGAAGCCGCAGAAGCCGAATCCTTACGCGCTTCGCGAAGCTGAAGGCGAAGGCGACCCTTCGCAAATCCCGAAAGCCCCAATTAGTCCCGCTGGCGCCGAGAACCACCGCCGGAAAGATGACGTCACCGCCGGAAAACAGTCTCCGTTTTTCCCGTTCTACAGCCCGAGCCCCGCGCGCTTCCTGAAGAAGTCTCCGGCGCCGGCGGGAGGGAGCAGGAGCGCGGCCTCCACGCCGAGGAGGTTCTTCAAGCGGCCGTTCCCTCCGCCGTCGCCGGCTAAGCACATAAGGGCTGTGCTGGCGCGGCGACAGGGGAAGAAGGCGGCTGCGGCGATATCGGAGGAGGGGGAGGATGGCGATGGAGGTGCGGCGGATTTGGATAAGAGGTTTGGGTTCTCTAAGGAGTTCACTAGTAGGTTGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTGGCTGTTAAGGTCATACCAAAAGCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATTTGATACGGTTCTATGATGCTTTTGAAGACCAAGATAATGTGTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTCTTAGATATGATATTATCAAGAGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTAATGGTGCAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTTGTGCACCGAGATCTTAAGCCAGAGAATTTTTTGTACACTAAAAAGGATGAGACTTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATACTATGTGGCTCCTGAGGTTCTCCATAGATCTTATAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATAGCATATATTCTTTTATGTGGTAGTCGTCCATTTTGGGCTCGAACGGAGTCTGGTATTTTTAGGGCAGTTCTGAAAGCTGATCCCGGCTTTGATGAAACACCATGGCCATCTTTATCTTCAGAAGCAAAGGATTTTGTGAAACGCTTACTGAATAAGGACCCTCGGAAGCGGATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATAAGGAATTACAATGATGTAAAAGTTCCACTTGATGTTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCATCCTTACGCAAGGCTGCCTTAAGGGCCTTGTCAAAAACATTGACTGCAGATGAACTCTATTATCTGAGGGAGCAATTTTCACTGCTAGAACCTAGCAAAAATGGCAGCATATCTTTAGAGAATGTTAACAAGGCCTTGATGAAATATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTCTGTGCAGCCGCGTTAAGTGTGCATCAACTCGAAGCTCTTGATCGTTGGGAACAACATGCTCGCTGTGCCTATGAGCTTTTTGATAAAGATGGAAACAGGGCTATTGTCATTGAAGAGCTTGCTTCAGAACTTGGACTTGGCCCCTCTATCCCTGTTCATGTTGTTCTTCACGACTGGATACGCCACACTGATGGAAAATTAAGCTTTCTTGGGTTTGTCAAATTATTGCACGGTGTATCTAGCAGAAGCCTTGCCAAGGTTCAATAA 1800 0.4656 MGVCTSKPQKPNPYALREAEGEGDPSQIPKAPISPAGAENHRRKDDVTAGKQSPFFPFYSPSPARFLKKSPAPAGGSRSAASTPRRFFKRPFPPPSPAKHIRAVLARRQGKKAAAAISEEGEDGDGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLIRFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTKKDETSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDETPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDVLIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFSLLEPSKNGSISLENVNKALMKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFDKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3028 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Pvu3g3028 599 SMART serkin_6 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g3028 599 ProSiteProfiles Protein kinase domain profile. 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g3028 599 Gene3D - 425 516 - -
Pvu3g3028 599 ProSitePatterns Protein kinases ATP-binding region signature. 151 177 IPR017441 GO:0005524
Pvu3g3028 599 Gene3D Phosphorylase Kinase; domain 1 147 233 - -
Pvu3g3028 599 Pfam Protein kinase domain 146 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g3028 599 SUPERFAMILY Protein kinase-like (PK-like) 141 449 IPR011009 -
Pvu3g3028 599 Gene3D - 432 586 - -
Pvu3g3028 599 PANTHER CDPK-RELATED KINASE 2 41 593 - -
Pvu3g3028 599 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 593 - -
Pvu3g3028 599 MobiDBLite consensus disorder prediction 1 94 - -
Pvu3g3028 599 CDD STKc_CAMK 146 406 - -
Pvu3g3028 599 Gene3D Transferase(Phosphotransferase) domain 1 234 420 - -
Pvu3g3028 599 SUPERFAMILY EF-hand 435 589 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3028 Pvu-Chr3 51981157 51986134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3028 1 595 EF-hand Containing Proteins AT3G50530 72.496 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu3g3028 Pkinase 5.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3028 - K00924 gmx:100798913 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0212 2 2268335 2273883 Pvu3g3028 3 51981157 51986134 PCT