Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3027 ATGGGGAGAGGAAGGTGCTTCTTGGACATCGGCATAGGGGAGGAGCTAGAAGGAAGGATAGTGGTGGAGCTTTACGATGATGTTACTCCCAAAACTGCAGAGAACTTCAGAGCTCTCTGCACTGGTGAGAAAGGCATTGGTCCAAATACTGGGGTGCCCCTTCATTTCAAGGGATCTTGCTTTCATCGTGTTGTTAAAGGGTTCATGATTCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAATCTATATACGGACATAAGTTTGAAGATGAAAATTTTGAGTTGAAGCATGAAAGAAAAGGGATGTTATCAATGGCAAACTCTGGTCCCAATACAAATGGGTCACAGTTTTTCATCACTACTACTCGAACTTCCCATCTAGACGGTAAGCATGTTGTATTTGGAAAAGTAGTTAAAGGAATGGGAGTGGTTCGATCAATTGAGCATGTTGTGACCGGGGAGGATGATCGTCCCATTCTTGATGTTAAAATTGTGGATTCTGGAGAAATTCCTGAAGGGGATGATGATGGAATATCTAACTTCTTCAAAGATGGAGACACCTATCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTTCTGAACTTGACTGGTGGATGAAATCTGTGGACTCAATCAAAACTTTTGGCAATGATCATTACAGGAAACAAGACTACAAAATGGCTCTAAGGAAGTATAGGAAAGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAGGAGATAAGTTCAGGATTGAGAAAAACCAAGTCTCAGATTTTCACAAACAGCTCTGCTTCAAAATTGAAACTAGGGGACATTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTTCGCCAAGGACAGGCATATATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGCTGGAATCAAAAAGGAACTTGCTGCTGCTAGGAGGAAGATAGCTGATAGGCATGACCTAGAGAAAAAAGCATATAGCAAGATGTTCCAATAA 1086 0.4245 MGRGRCFLDIGIGEELEGRIVVELYDDVTPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVVKGFMIQGGDISAGDGTGGESIYGHKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVVTGEDDRPILDVKIVDSGEIPEGDDDGISNFFKDGDTYPDWPADLDESPSELDWWMKSVDSIKTFGNDHYRKQDYKMALRKYRKALRYLDICWEKEGIDEEISSGLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDNNAKALFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARRKIADRHDLEKKAYSKMFQ* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3027 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 361 - -
Pvu3g3027 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Pvu3g3027 361 SMART tpr_5 212 245 IPR019734 GO:0005515
Pvu3g3027 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Pvu3g3027 361 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Pvu3g3027 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 170 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 361 - -
Pvu3g3027 361 SUPERFAMILY Cyclophilin-like 3 173 IPR029000 -
Pvu3g3027 361 Gene3D - 2 179 IPR029000 -
Pvu3g3027 361 CDD cyclophilin_ABH_like 5 171 - -
Pvu3g3027 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Pvu3g3027 361 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Pvu3g3027 361 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
Pvu3g3027 361 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Pvu3g3027 361 SUPERFAMILY TPR-like 208 359 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3027 Pvu-Chr3 51961197 51965267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3027 14 170 U-box Gene Family AT5G67530 44.304 6.09e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3027 K05864 - gmx:100804110 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3027 3 51961197 51965267 Pvu3g3027 3 51961197 51965267 ECH