Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3023 ATGGGTTCGGTTCCGGCAGAACTGAGCTTGGATTTGAGACCCTCCTCTGTCCCCAAAACCATCACCGATTTCCTCCGCCACCTCTCCTCCGCCTCCGACCGCCTCGCCACTCTCCACGATTTCCTCGCGCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCACTTCTCAAGGCGGAATCGCAGAAATGCCGGCCGCGTGATTCTCCGCCGGCGTTGGAGGAGTTCATTCCCTTGAAGAAGGAGCATGATCGTAACGACGGGAATAACCATAATGATGATAATGACAATGATAACGAATGCAGGGATAAGAGGAATTGGTTGAGTTCTGTTCAGCTTTGGAATAACACTACCACTAATAACAATGCATCCGATCGGAAACAGCAGCAACAACTTCATAAATTAGAAACCAAGAAAATTGAAGAAGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGTAGCAATAGAAATGGAGGAAGAAGGGCGTTTATGCCTTTCTCTAGGCCCTCATCTTCTTCATCTTCTGTGCCGGTGGCAACAATGGGCCTGGCTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTGTCTTCAGACCCCTTCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAACAGGGCTGTTTCTTCTTCTTCTCCTCCTACGGTTCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCCAGGAAGCAGAGGAGATGCTGGTCCCCTGAGTTGCACAGACGATTTGTTAATGCTTTGCAGAAACTAGGAGGTTCTCAGGCAGCAACACCAAAACAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACTAACGATGAAGTGAAAAGCCACTTACAAAAATACCGACTTCATACGCGGAGAGTTCCATCAGCAAGTGGTAATCAGCCAGTTGTGGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGAGTCCTCAAAAGTTAGCAGTTCAGGATCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTGCAGGGTCTGGAGGGGGAACATCCCCAAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCACAAACCTGGAAAAGTTGATGTATAG 1209 0.4855 MGSVPAELSLDLRPSSVPKTITDFLRHLSSASDRLATLHDFLARLEDELRKIHAFKRELPLSMLLLNDAISLLKAESQKCRPRDSPPALEEFIPLKKEHDRNDGNNHNDDNDNDNECRDKRNWLSSVQLWNNTTTNNNASDRKQQQQLHKLETKKIEEGQSVGEDPFQSCSNRNGGRRAFMPFSRPSSSSSSVPVATMGLAAATKEEKEESVMNRLCLQTPSSVKEGCGSRGSRSSSNRAVSSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSASGNQPVVVLGGLWMSQDQYNESSKVSSSGSGSPQSPLHLTAGSGGGTSPSMEDDEDARSESYSWKSHMHKPGKVDV* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3023 402 PANTHER TRANSCRIPTION FACTOR HHO6 7 396 - -
Pvu3g3023 402 MobiDBLite consensus disorder prediction 346 402 - -
Pvu3g3023 402 MobiDBLite consensus disorder prediction 95 118 - -
Pvu3g3023 402 MobiDBLite consensus disorder prediction 377 402 - -
Pvu3g3023 402 Pfam Myb-like DNA-binding domain 266 317 IPR001005 -
Pvu3g3023 402 Gene3D - 263 321 - -
Pvu3g3023 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 264 319 IPR006447 GO:0003677
Pvu3g3023 402 SUPERFAMILY Homeodomain-like 261 322 IPR009057 -
Pvu3g3023 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 396 IPR044787 GO:0003700|GO:0006355
Pvu3g3023 402 MobiDBLite consensus disorder prediction 222 267 - -
Pvu3g3023 402 MobiDBLite consensus disorder prediction 155 177 - -
Pvu3g3023 402 MobiDBLite consensus disorder prediction 346 373 - -
Pvu3g3023 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 321 IPR017930 -
Pvu3g3023 402 MobiDBLite consensus disorder prediction 222 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3023 Pvu-Chr3 51926447 51929176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3023 6 340 G2-like Transcription Factor Family AT2G03500 39.655 1.95e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu3g3023 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3023 - - gmx:100806237 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3023 3 51926447 51929176 Pvu3g3023 3 51926447 51929176 ECH
Pvu2g0218 2 2328158 2330351 Pvu3g3023 3 51926447 51929176 PCT