Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3009 ATGTCTTCCTCCGCCTCCTTCTCCGCCGCCACTCTCACCACCGAGCAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGCTCCACCTCCTCCATCCCCGACTTCCGCCTCCCCAGCGCCTCCCAGCCTCCCGCCGCAACCGCCTTCGACCGGATGGTCCCGCCGCCCTCCATGGACACGTGTCGCGAGTGCAAAATCGCCGGCTGCCTGGGCTGCAACTTCTTCCCCGAAGAGAAGAAGAAACAGAAGAGGGCCAAGAAGAAATACAGAGGAGTCAGACAAAGACCGTGGGGTAAGTGGGCCGCGGAGATTCGCGACCCACGCCGCGCGGCCCGAGTCTGGCTCGGAACTTTCAACACGGCCGAGGAAGCGGCCCGGGCCTACGATAATGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCTGTGGTGGACGAGTCCCTAAGCATGCAGCAGAGAGAAACAGAGACCGTTGCAGCGGCAGAGCAACTGAAGAACGAGAATCCCAACCAGAGCATGGAAGTGAACGCAGTGGAATTCGGGAACAGCAACACCGAATTCTGGGACAGAATTGGCGAAGCTGATTTTCATCAGCTGATGATGATGATGGATTTCGCCGCAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGA 684 0.5994 MSSSASFSAATLTTEQELSVIVAALTNVVAGSTSSIPDFRLPSASQPPAATAFDRMVPPPSMDTCRECKIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDNAAIEFRGPRAKLNFPVVDESLSMQQRETETVAAAEQLKNENPNQSMEVNAVEFGNSNTEFWDRIGEADFHQLMMMMDFAADSSDSATGNTLSS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3009 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 223 - -
Pvu3g3009 227 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Pvu3g3009 227 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Pvu3g3009 227 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Pvu3g3009 227 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Pvu3g3009 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 6 223 - -
Pvu3g3009 227 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Pvu3g3009 227 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Pvu3g3009 227 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Pvu3g3009 227 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3009 Pvu-Chr3 51831261 51832171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3009 7 157 AP2-EREBP Transcription Factor Family AT4G34410 48.128 1.60e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu3g3009 AP2 5.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3009 - - gsj:114420690 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3009 3 51831261 51832171 Pvu3g3009 3 51831261 51832171 ECH