Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3000 ATGAAGAGGGAGCGCCAAAACCTTGCTTCCACCGCAGGCACCTCAAGCAGCGGCTACTCCACCGGAAAATCGAACCTCTGGGAGGACGAAGGAGGCATGGACGAGCTTCTCGCCGTGGTCGGCTACAAGGTCAGATCCTCCGACATGGCGGAGGTGGCGCAGAAGCTGGAGCGTCTTGAAGAAGCTATGGGAAACGTTCAAGACGGTCTCAAGGAGCTTTCAGACGACGCTGTACACTACAACCCCTCCGACATCTCCAACTGGCTCCAAACCATGCTCTCCAATTTCGATTCCCTTACTCCAGAAGAACCGGACAAGGGCTACGATCTCAAGGCTATTCCGGGGAAAGCAATTTACGACGGAGGTGTAGGCACCGCGCCAAACCCTAAGCGTCTCAAATCCGCCGAGTCAACGCAGGCGTTTGTGGTTGTTGACTCCCAGGAGAACGGGATCCGCCTCGTGCACAGCCTCATGGCGTGCGCGGAGGCCGTCGAGAACAACAACCTCGCCGTGGCGGAGGCGCTGGTGAAGCAGATCGGATTCCTCGCGGTGTCGCAGGTGGGAAGTATGCGGAAAGTCGCCACGTACTTCGCGGAAGCGCTCGCGAGGCGAATCTACCGCGTTTTCCCTCTCCAGCAGTCGCTCTCGGACTCTCTCCAGATTCACTTCTACGAAACCTGTCCTTACATCAAGTTCGCTCACTTCACCGCGAACCAGGCTATTCTGGAAGCCTTCCAAGGGAAGAGCCGCGTGCACGTCATAGATTTCGGAATCAACCAGGGGATGCAGTGGCCGGCACTGTTGCAGGCTCTCGCGCTTCGTCCCGGCGGCCCTCCCGCTTTCCGCCTCACCGGAATCGGACCTCCGGCAGCGGATAACTCCGACCACCTGCAGGAAGTTGGATGGAAGCTTGCACAGTTGGCGGAGATGATCAACGTGCGGTTTGAGTACCGTGGCTTTGTCGCCAACAGTCTCGCGGATCTCGACGCGTCCATGCTCGACCTCCGAGATGACGAGCCCGTGGCGGTTAACTCCGTCTTCGAGTTTCACAAGCTCCTCGCGCGCCCTGGTGCCATCGAGAAGGTCCTCTCCGTTGTGCGGCAGATTCGGCCGGAGATTCTGACTGTGGTGGAACAAGAATCGAATCATAACGGACTGAGTTTTCGCGACCGCTTCACTGAGTCGCTACACTATTATTCCACTTTGTTCGACTCGCTGGAGGGTTCCCCTGTGAATCCACAGGACAAGGCGATGTCGGAGGTATACCTGGGAAAGCAAATCTGTAATGTGGTGGCCTGCGAGGGAACAGACCGCGTGGAACGGCACGAGACGCTGAACCAGTGGCGGAGCCGGTTCAGTTCGACCGGGTTTTCTCCGGTTCATTTGGGTTCCAACGCGTTTAAGCAGGCTAGCATGTTGCTAGCACTTTTCGCCGGTGGGGATGGGTATAGGGTGGAGGAGAACAGTGGGTGTCTCATGCTGGGGTGGCACACAAGGGCCTTGATTGCCACGTCCGCCTGGCAACTCGCTGAAAAACCGGTGGTTGCGGTCTGA 1554 0.5792 MKRERQNLASTAGTSSSGYSTGKSNLWEDEGGMDELLAVVGYKVRSSDMAEVAQKLERLEEAMGNVQDGLKELSDDAVHYNPSDISNWLQTMLSNFDSLTPEEPDKGYDLKAIPGKAIYDGGVGTAPNPKRLKSAESTQAFVVVDSQENGIRLVHSLMACAEAVENNNLAVAEALVKQIGFLAVSQVGSMRKVATYFAEALARRIYRVFPLQQSLSDSLQIHFYETCPYIKFAHFTANQAILEAFQGKSRVHVIDFGINQGMQWPALLQALALRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAEMINVRFEYRGFVANSLADLDASMLDLRDDEPVAVNSVFEFHKLLARPGAIEKVLSVVRQIRPEILTVVEQESNHNGLSFRDRFTESLHYYSTLFDSLEGSPVNPQDKAMSEVYLGKQICNVVACEGTDRVERHETLNQWRSRFSSTGFSPVHLGSNAFKQASMLLALFAGGDGYRVEENSGCLMLGWHTRALIATSAWQLAEKPVVAV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3000 517 Gene3D - 32 96 IPR038088 -
Pvu3g3000 517 ProSiteProfiles GRAS family profile. 144 508 IPR005202 -
Pvu3g3000 517 Pfam Transcriptional regulator DELLA protein N terminal 34 98 IPR021914 -
Pvu3g3000 517 Pfam GRAS domain family 153 508 IPR005202 -
Pvu3g3000 517 MobiDBLite consensus disorder prediction 1 26 - -
Pvu3g3000 517 PANTHER DELLA PROTEIN GAI1-RELATED 2 99 IPR030006 GO:0003712|GO:0005634
Pvu3g3000 517 PANTHER DELLA PROTEIN GAI1-RELATED 134 509 IPR030006 GO:0003712|GO:0005634
Pvu3g3000 517 SMART DELLA_2 34 106 - -
Pvu3g3000 517 Coils Coil 49 76 - -
Pvu3g3000 517 MobiDBLite consensus disorder prediction 7 24 - -
Pvu3g3000 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 99 IPR005202 -
Pvu3g3000 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 509 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3000 Pvu-Chr3 51739610 51742171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3000 28 510 GRAS Transcription Factor Family AT1G14920 70.097 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu3g3000 GRAS 1.2e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3000 K14494 - gmx:547718 877.856