Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2987 ATGCCTGCCCTCATCGATCTCAACAGCGCCACCGAGGACCATGAAACGCCGTCGTCTCGCCCATCCTCCGTCTGCCTCGAACTCTGGCACGCCTGCGCGGGTCCTATGATCTCCTTGCCCAAGAAAGGGACCCTTGTCGTGTACTTCCCTCAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTCCCTGCTTCTGCTAACATCCCCTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATTCTGAGGAAGGGAGCGATGAGGTGTATTGCCAGGTGGTGCTGGTTCCCGAAAGTGAGCAAGGGCATCAGAAGTTGCGGGAAGGGGAAATTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACTCATGGCGGATTCTCTGTGCCTCGTCGTGCTGCGGAAGATTGTTTTCCACCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCGAAGGATCTGCATGGCCAAGAATGGAGGTTCCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTAGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAATTGAAAAGTGGCAGTACCATTTCAACTTTTGCTGGCCAGCAATTGAATCATAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAGATGTGCCTTTAGTGTTCACTATAATCCAAGGGTCAGTTCATCTGAGTTCATCATACCCATTAAGAAATTCTTGAGGAGCCTTGATTATTCTTATTCAGTTGGAACAAGATTTAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACCTGGAAGCCACAAGGCATAATAGGGTTTCACCCTGGGAGATTGAGCCATCTGGTTCTGCATCTACTGCAAATAACATGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAACCAAGCTAGATTTTCAAGTTTCCAATGCAATTGGAGCATCAGACTTTGGCGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAACACAACTTTTGATAGTACTAATGGTCAGGGTCACCAGCTATCAGATTTGAGGAGATGCTATCCTGGCTCAAACTGTTCTAGGATTGCTGCAACCGGAAACAGCATTGGAATTCCGCAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTCAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACCTTTTGATGGTTACCATACACTGAGATCCAGAAATGGATGGTCTTCCCACTTGAGTAACAGTTCTTCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCACACAATCCAGTTTCAAACTCTGATTACAACAGCAAAATTAGTCAGGTGATGGAAGGTAAAGTCCAGCAACGATCATCATACACTTCTGAAGCTAAAGGTGGAAAATTTGTATCAACCCCTTATGAGCCTCTTCGTGGACTAGCTCAGGAAGGCACAAATTCTTATGGGGTCTCAAACTTGCACAATCAGTTTGAAACTTCACGTTCACACGATTCTATTTCAGCACTTCGGGCTACTCAAGAGTTGGTTCCCACATGTAAAAGTCGATGCAGAGTCTTTGGCTTCTCATTAACTGAGGGTGCTCCTGTTGCAAGTAAAGAAGTAGCCGGCACCGACCCATCGGCCGTCACATGTTCTGGACCTTCCTTTGCAAGACACGCTGAAGATGATTTCCATCCAGTGCATAGCAAGGCAGTGGGAAGTTATTGCACCAAAGGTGTGCTGCAATATTGA 2121 0.4663 MPALIDLNSATEDHETPSSRPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHSEEGSDEVYCQVVLVPESEQGHQKLREGEIDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSRDAVLFLRGEDGELRLGIRRAAQLKSGSTISTFAGQQLNHSSLLDVVNALSARCAFSVHYNPRVSSSEFIIPIKKFLRSLDYSYSVGTRFRMRFETEDAAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTANNMISAGLKRTKIGLPSTKLDFQVSNAIGASDFGESLRFQKVLQGQEMLGVNTTFDSTNGQGHQLSDLRRCYPGSNCSRIAATGNSIGIPQVSSNVSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGPFDGYHTLRSRNGWSSHLSNSSSHLHPPVPSGQVSSPSSVLMFQQAHNPVSNSDYNSKISQVMEGKVQQRSSYTSEAKGGKFVSTPYEPLRGLAQEGTNSYGVSNLHNQFETSRSHDSISALRATQELVPTCKSRCRVFGFSLTEGAPVASKEVAGTDPSAVTCSGPSFARHAEDDFHPVHSKAVGSYCTKGVLQY* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2987 706 SUPERFAMILY DNA-binding pseudobarrel domain 127 245 IPR015300 -
Pvu3g2987 706 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Pvu3g2987 706 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Pvu3g2987 706 Gene3D - 132 236 IPR015300 -
Pvu3g2987 706 SMART B3_2 134 236 IPR003340 GO:0003677
Pvu3g2987 706 PANTHER AUXIN RESPONSE FACTOR 16 706 - -
Pvu3g2987 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 706 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu3g2987 706 MobiDBLite consensus disorder prediction 526 546 - -
Pvu3g2987 706 Gene3D - 297 371 - -
Pvu3g2987 706 CDD B3_DNA 132 234 IPR003340 GO:0003677
Pvu3g2987 706 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2987 Pvu-Chr3 51612127 51617236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2987 22 488 B3 DNA Binding Superfamily AT5G60450 50.628 6.02e-143 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu3g2987 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2987 K14486 - gmx:100808119 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2987 3 51612127 51617236 Pvu3g2987 3 51612127 51617236 ECH