Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2982 ATGGATTTCGAGGACCAGCCCTTCAACCCCCTTCCGCCGCCGCCCACTCCACCACCCACCACCAACCCAAACACCGCCAAGGGAAACTACAAAGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGCGCCGAGGGCACCCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCCGCCGAGAGCTCCTTTCAGCTGCGCCGCCACCGGGCGCCGCAGTTCGCGGCGGCCTTCTACCGGGCCCCGGCGGGGTACCTGCAGGTGGCGGGGCCGCAGCGTGGAGGCCTCGCCACGCTGGCACTCCCGTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGGGGGAGGAGCAGGAAAATGTGTCGGAGCCAAGTGGTGGTGGTGGTGGTTGCGGGTCCCACAAAAAGAGGTTCAGAACTAAGTTCTCTCTTGAACAGAAAGACAAAATGCTCGCTTTCGCCGAAAAACTGGGTTGGAGGATTCAGAAGCACGACGAGAGTCTCGTGCAGGAGTTCTGCTCCCAAACAGGCCTTCAGCGTCACGTCCTCAAGGTTTGGATGCATAACAACAAACACACACTTGGTAAGAAGCCCTAG 660 0.6333 MDFEDQPFNPLPPPPTPPPTTNPNTAKGNYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPAESSFQLRRHRAPQFAAAFYRAPAGYLQVAGPQRGGLATLALPSTSGAGGGAQSPGEEQENVSEPSGGGGGCGSHKKRFRTKFSLEQKDKMLAFAEKLGWRIQKHDESLVQEFCSQTGLQRHVLKVWMHNNKHTLGKKP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2982 219 Gene3D - 141 217 - -
Pvu3g2982 219 MobiDBLite consensus disorder prediction 121 155 - -
Pvu3g2982 219 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 156 212 IPR006455 -
Pvu3g2982 219 MobiDBLite consensus disorder prediction 126 141 - -
Pvu3g2982 219 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 21 218 - -
Pvu3g2982 219 Pfam ZF-HD protein dimerisation region 29 79 IPR006456 -
Pvu3g2982 219 MobiDBLite consensus disorder prediction 7 22 - -
Pvu3g2982 219 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 218 - -
Pvu3g2982 219 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
Pvu3g2982 219 MobiDBLite consensus disorder prediction 1 28 - -
Pvu3g2982 219 SUPERFAMILY Homeodomain-like 143 217 IPR009057 -
Pvu3g2982 219 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2982 Pvu-Chr3 51554631 51555290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2982 26 215 ZF-HD Transcription Factor Family AT4G24660 54.737 1.39e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu3g2982 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2982 - - gmx:100798992 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1534 2 28808014 28808762 Pvu3g2982 3 51554631 51555290 PCT