Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2980 ATGGAAGAGAGCATTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATGACATGTGCTTTGATGATTTTGACTGTAATGTTGCAGATGAGTCTCCTTACTGGGACCGCAAAAATCCTAACTTTAACAATCAATGTCTGATTGAGGACAATCTTGGATTGGATTCTCCTGTACTGAGTGATGAAATTGTTTTGGGTTTGGTTGGGAAGGAGAGGGATCATTTGCCCCGGGATGATTACCTCCAGAGGCTGCTTGGTGGGGACTTGGACTTGAGTGTTAGGAGGCAGGCTCTTGATTGGATTTGGAAGGCTCATGCACACTATGATTTTGGACCCTCTAGCTTATGTCTATCTGTGAACTACTTGGATCGGTTCCTATCGGTCTATGAATTACCAGGAGGCAACACTTGGAGTGCACAACTGTTAGCTATAGCATGTCTGTCAATTGCTACTAAAATGGATGAGATCAAAGTGCCTTCTTGTATAGATATACAGGTTGGAGAACCTAAGTTTCTATTTGAAGCTAAAACCATTCAAAGAATGGAACTACTGGTATTAAGCACATTGAAATGGAAAATGCAAGCTTTAACTCCATTTTCCTTCGTAGACTACTTCCTCAAGAAGATCACTTGTGACCAACTTCTAGTAAGGTCATCCATTCTGAGATCAGTTGGGCTCATCCTTGACATAATTACATGTGTCAATTTCTTGGAATTCAAGCCTTCTGAAATTGCTGCAGCAGTGGCAATTTCTGTGTCAAGAAAATTTCAAGCAGAAGAGATTGATGAAGCTTTGACATCTTTTGTGATTGTAGGAAAGGAAAGAATTCTGAAGTGTCTTGAATTGATTAGAGATTTGCCTTTGATCCAAGCTTCTACTAATTTGGGCAGCAACTTAGCACCATTGGTGCCTCAAAGCCCCATTGGGGTGCTGGATGCTGCATGCTTGATCTCTATTAGTGATGAATTAACCCTTGGATTTTCTACAGATTCTTCTCTTGATACTCCAAATTCTAAGAGGATGAAATCTTGTTGA 1038 0.4094 MEESIDPATSSLLCLENNDMCFDDFDCNVADESPYWDRKNPNFNNQCLIEDNLGLDSPVLSDEIVLGLVGKERDHLPRDDYLQRLLGGDLDLSVRRQALDWIWKAHAHYDFGPSSLCLSVNYLDRFLSVYELPGGNTWSAQLLAIACLSIATKMDEIKVPSCIDIQVGEPKFLFEAKTIQRMELLVLSTLKWKMQALTPFSFVDYFLKKITCDQLLVRSSILRSVGLILDIITCVNFLEFKPSEIAAAVAISVSRKFQAEEIDEALTSFVIVGKERILKCLELIRDLPLIQASTNLGSNLAPLVPQSPIGVLDAACLISISDELTLGFSTDSSLDTPNSKRMKSC* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2980 345 PANTHER CYCLINS 60 343 IPR039361 -
Pvu3g2980 345 SUPERFAMILY Cyclin-like 179 287 IPR036915 -
Pvu3g2980 345 Gene3D - 68 282 - -
Pvu3g2980 345 Pfam Cyclin, C-terminal domain 198 288 IPR004367 -
Pvu3g2980 345 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Pvu3g2980 345 Pfam Cyclin, N-terminal domain 70 194 IPR006671 -
Pvu3g2980 345 SUPERFAMILY Cyclin-like 59 194 IPR036915 -
Pvu3g2980 345 PANTHER CYCLIN-D4-1-LIKE 60 343 - -
Pvu3g2980 345 SMART Cyclin_C_2 197 320 IPR004367 -
Pvu3g2980 345 CDD CYCLIN 95 187 IPR013763 -
Pvu3g2980 345 SMART cyclin_7 100 188 IPR013763 -
Pvu3g2980 345 Gene3D - 78 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2980 Pvu-Chr3 51528539 51531066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2980 42 326 Core Cell Cycle Gene Families AT2G22490 48.355 7.55e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2980 K18810 - gmx:100800570 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1531 2 28774731 28777298 Pvu3g2980 3 51528539 51531066 PCT