Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2970 ACCAACCATAACACCTTGTTTTATTTTCTTTCATCTTGTTTATGGCTGATAATAACATCACCACAGTTCTCTCACACACAAACATACACAGTGCAACGCCTTGAGCAACGCCTTGTTTTTTTGTTCGGTCATTTGTTTGTTTCGGCGGAAAACCCGTTCGAAACTGTCGTTTTTTTGCTGATCTGGTCGAACTGTAGACAAACCATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCGTGGAAGTGGTCAGATCCCCTGACTCCTCCTCTCACTGCTTCCTCGATAACTTTTATGCCACCAATGGGTGGACAAATTCCAAGGGATTGATGGATTCCGAGATTGAAAACCAGCCACTTCTGGAGCCCAAAATGGAAGATTTTTTTGAGAACCAAACAGAGACTACCCAACAAGACGATTCTTCATTGACCCAAATTTACGATCATGGGTCTGCGTCTGTTTACTTCGGGGACCAGCAAGATCTGAACTTCTTCCCGGACTTCAAAGCATTCCCTTCCACCAACTCCGGCTCCGAGTTGGATGACTCAGCCTCTGACAGGACCAATCTGGTTGCACCCGCTGAGTTAGGTGCCCATTTGGGAGACTCATGCAAAGGAGCTATGTCTTTATGTGACGCAGTTGCACATGAAAAGACCATCATTGCTGCGGCGGAGTTTGATACACCGCAGAAGGTTTCCCATGCCATTGGCCAGCGAACTTCAATATACAGAGGGGTCACGAGACATCGATGGACTGGTAGATATGAAGCCCATCTATGGGACAACACCTGTAGAAGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAAGAGAAGGCTGCTAGAGCTTATGATTTAGCAGCTATCAAGTACTGGGGATCAACAGCAACCACCAACTTTCCTATTTGCACTTATACAAAGGAATTGGAAGAGATGAAATATGCAGGAAAACAAGAATTCATTGCATCACTGCGCAGGAAAAGTAGTGGATTTTCAAGGGGAGCTTCTGCATTCAGGGGTGTTACGAGGCATCATCAGCAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCTGGAAACAAGGATCTATACCTGGGAACATTTGCAACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAGGTGCTGTAACCAATTTTGAGATGAGCAGATATGATGTGGAGAGTATACTGAATAGCTCTCTTCCAGTTGGTGGGGTAGCAAAACGCTTGAAGCTTTCTCCAGAATTGGAGAACAAAGCTTTTGATGAACAACTTCAGTACACAAAGGAGAGTAGCACCATCAATTTCTCTGCCATTCAGCCAATTGCATCTATACCATATGATTCTGCAAACTCATGTTACCCTCAGAACCTCTACCACCATTTTCATGCTTCAAACAGTGGAAGTAGCACGGCACAAGATTCTGCTGCCATTGTGAGCAATGCAACTGCACTGAGCATCCTTCCACCTCCACCAGTTCCTGAGTTCTTTTTATGGCCACCTCAGTCCTTTTAA 1566 0.4591 TNHNTLFYFLSSCLWLIITSPQFSHTQTYTVQRLEQRLVFLFGHLFVSAENPFETVVFLLIWSNCRQTMAGATNWLTFSLTPVEVVRSPDSSSHCFLDNFYATNGWTNSKGLMDSEIENQPLLEPKMEDFFENQTETTQQDDSSLTQIYDHGSASVYFGDQQDLNFFPDFKAFPSTNSGSELDDSASDRTNLVAPAELGAHLGDSCKGAMSLCDAVAHEKTIIAAAEFDTPQKVSHAIGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQARKGRQVYLGGYDKEEKAARAYDLAAIKYWGSTATTNFPICTYTKELEEMKYAGKQEFIASLRRKSSGFSRGASAFRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGAGAVTNFEMSRYDVESILNSSLPVGGVAKRLKLSPELENKAFDEQLQYTKESSTINFSAIQPIASIPYDSANSCYPQNLYHHFHASNSGSSTAQDSAAIVSNATALSILPPPPVPEFFLWPPQSF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2970 521 ProSiteProfiles AP2/ERF domain profile. 346 404 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 114 518 - -
Pvu3g2970 521 SUPERFAMILY DNA-binding domain 345 406 IPR016177 GO:0003677
Pvu3g2970 521 SMART rav1_2 244 316 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 SMART rav1_2 346 410 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 CDD AP2 243 311 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 Gene3D AP2/ERF domain 346 406 IPR036955 GO:0003700|GO:0006355
Pvu3g2970 521 Gene3D AP2/ERF domain 244 312 IPR036955 GO:0003700|GO:0006355
Pvu3g2970 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 518 - -
Pvu3g2970 521 SUPERFAMILY DNA-binding domain 243 311 IPR016177 GO:0003677
Pvu3g2970 521 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 PRINTS Ethylene responsive element binding protein signature 386 406 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 Pfam AP2 domain 346 396 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 Pfam AP2 domain 244 302 IPR001471 GO:0003700|GO:0006355
Pvu3g2970 521 ProSiteProfiles AP2/ERF domain profile. 244 310 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2970 Pvu-Chr3 51447092 51451369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2970 125 521 AP2-EREBP Transcription Factor Family AT5G65510 52.444 5.76e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu3g2970 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2970 K09285 - gmx:100795280 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1509 2 28359488 28364314 Pvu3g2970 3 51447092 51451369 PCT