Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2960 ATGGCTGTTACACCAGGACTGGAGCATGCAAGGAAGGCTATTGGATGGGCAGCTAGAGACACATCTGGGGTTCTCTCCCCCTTCAACTTCACCAGAAGGGAAACAGGAGACAAAGATGTAGCAATCAAAGTGTTGTTCTGCGGTGTATGCCACAGTGATCTCCATAATGCAAAGAGTGATTGGGGTCAATCTTTTTATCCACTCGTACCAGGGCACGAGATTGCAGGTGAAGTGATAGAGGTAGGAAGCAAAGTTGGAAAGTTCAAAGTGGGTGAGAAGGTGGGTGTGGGGTGCATGGTTCAATCATGTAGATCATGCAAAAGCTGTGGTGAGAATCTTGAGAATTACTGTCAAGGAATGGTTCTGACGTATGGATCGAAGGATATTGATGGAAGCATCACACAAGGAGGGTACTCTGATATGGTGGTTGTAGATGAACACTTTGTGATCAGCATTCCTGATGGCCTACCTCTTGAGGCTGCTGCTCCTCTTTTATGTGCTGGGATCACTGTCTATAGCCCTCTCTTATATTTTGGACTTGCAAAGCCAGATCTACATGTGGGTGTTGTTGGTCTTGGTGGTGTTGGCCATATGGCTGTGAAGTTTGCCAAATCTTTTGGGGCTAAGGTCACTGTAATCAGCACATCTCCCAACAAAAGGAAGGAAGCCATTGAGCATCTTGGAGCTGACTCATTTGTGGTCAGTCGAGAGCAAGATCAAATGCAGGCTGCAAAGGGCACCTTGGATGGTATAATAGACACAGTTTCTGCAGTTCATCCTCTGCTCCCTCTGCTTGAATTGTTGAAGACTCATGGGAAGCTTGTCATTGTTGGTTTACCTGATAAGCCTTTGGAGCTATCTGCCTTTCCTTTAGTTGTAGCGAGAAAGATGGTAGCTGGGAGTTGCATTGGAGGAATAAAGGAGACGCAAGAAATGATTAATTTTGCTGCCAAACACGATGTAAAGCCTGATATTGAGGTTATTCCTATTGATTATTTGAACAAGGCAATGGAGCGTCTGGTGAAAGCAGATGTGAAATATCGATTTGTTATTGACATTGGCAACACACTATGA 1074 0.4497 MAVTPGLEHARKAIGWAARDTSGVLSPFNFTRRETGDKDVAIKVLFCGVCHSDLHNAKSDWGQSFYPLVPGHEIAGEVIEVGSKVGKFKVGEKVGVGCMVQSCRSCKSCGENLENYCQGMVLTYGSKDIDGSITQGGYSDMVVVDEHFVISIPDGLPLEAAAPLLCAGITVYSPLLYFGLAKPDLHVGVVGLGGVGHMAVKFAKSFGAKVTVISTSPNKRKEAIEHLGADSFVVSREQDQMQAAKGTLDGIIDTVSAVHPLLPLLELLKTHGKLVIVGLPDKPLELSAFPLVVARKMVAGSCIGGIKETQEMINFAAKHDVKPDIEVIPIDYLNKAMERLVKADVKYRFVIDIGNTL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2960 357 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Pvu3g2960 357 Gene3D - 16 353 - -
Pvu3g2960 357 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Pvu3g2960 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Pvu3g2960 357 Gene3D - 167 323 - -
Pvu3g2960 357 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Pvu3g2960 357 SUPERFAMILY GroES-like 20 183 IPR011032 -
Pvu3g2960 357 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 357 - -
Pvu3g2960 357 CDD CAD1 15 352 - -
Pvu3g2960 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Pvu3g2960 357 PANTHER ALDEHYDE REDUCTASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2960 Pvu-Chr3 51335652 51337944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2960 11 357 Monolignol Biosynthesis Gene Families AT4G37990 68.300 2.51e-158 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2960 - - gmx:100816901 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1493 2 28125572 28127262 Pvu3g2960 3 51335652 51337944 PCT