Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2959 ATGGCTGTTACACCAGGACTCGAGCATTCAAGGAAGGCTTTTGGCTGGGCAGCTAGAGACACATCTGGGGTTCTCTCCCCCTTCAACTTCACCAGAAGGGAAACAGGAGACAAAGATGTAGCAATCAAAGTGTTATTCTGCGGTATATGTCACACAGACCTCCATAATGCAAAGAGTGAATGGGGCCAATCCTTTTATCCACTCGTACCCGGGCACGAGATTGCAGGTGAGGTGATAGAGGTAGGAAGCAAGGTAGAGAAGTTCAAGGTGGGAGAGAAGGTGGGTGTGGGGTGCATGGTTCAATCCTGTAGGTCATGCGGCAACTGTAGTGATAATCTTGAGAATTTCTGTTCAAAATTGGTTCTGACGTATGGATCGAAGGATATCGATGGAAGCATCACACAAGGAGGGTATTCTGATATGGTGGTTGTAGATGAACACTTTGTGATCAGCATTCCTGATGGCTTACCTCTTGAGGCTGCTGCTCCTCTCTTATGTGCTGGGATCACTGTCTATAGCCCTCTCTTATATTTTGGACTTGCAAAGCCAGATCTGCATGTGGGTGTTGTTGGTCTTGGTGGTGTTGGCCATATGGCTGTGAAGTTTGCCAAAGCTTTTGGGGCTAAGGTCACTGTAATCAGCACATCTCCCAACAAAAAGAAGGAAGCCATTGAGCATCTTGGAGCTGACTCATTTCTCATCAGTCGTAATCAAGATGAGATGGAGGCTGCAAAGGGCACCCTGGATGGTATCATAGACACAGTTTCTGCAGTGCATCCTCTGCTCCCTCTGATTAATTTGCTGAAGAGTCAAGGGAAAATTGTGATAGTTGGTCTACCTGATAAGCCTTTGGAACTACCCATCTTTCCTTTACTAGATAGAAAGAGTGTAGCTGGGAGTTGCATTGGAGGAATTAAGGAGACTCAAGAAATGATTAATTATGCTGCCAAATACGATATAAAGCCTGATATTGAGATTATTCCTATTGATTATGTAAACACAGCAATGGAGCGTCTCCTCAAATCAGATGTCAAATATCGATTTGTTATTGACATTGGCAACACACTCAAGTCAAGTTCTTAA 1083 0.4451 MAVTPGLEHSRKAFGWAARDTSGVLSPFNFTRRETGDKDVAIKVLFCGICHTDLHNAKSEWGQSFYPLVPGHEIAGEVIEVGSKVEKFKVGEKVGVGCMVQSCRSCGNCSDNLENFCSKLVLTYGSKDIDGSITQGGYSDMVVVDEHFVISIPDGLPLEAAAPLLCAGITVYSPLLYFGLAKPDLHVGVVGLGGVGHMAVKFAKAFGAKVTVISTSPNKKKEAIEHLGADSFLISRNQDEMEAAKGTLDGIIDTVSAVHPLLPLINLLKSQGKIVIVGLPDKPLELPIFPLLDRKSVAGSCIGGIKETQEMINYAAKYDIKPDIEIIPIDYVNTAMERLLKSDVKYRFVIDIGNTLKSSS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2959 360 PANTHER ALDEHYDE REDUCTASE 1 359 - -
Pvu3g2959 360 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Pvu3g2959 360 Gene3D - 16 352 - -
Pvu3g2959 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Pvu3g2959 360 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 359 - -
Pvu3g2959 360 Gene3D - 167 322 - -
Pvu3g2959 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Pvu3g2959 360 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Pvu3g2959 360 SUPERFAMILY GroES-like 20 183 IPR011032 -
Pvu3g2959 360 CDD CAD1 14 351 - -
Pvu3g2959 360 Pfam Zinc-binding dehydrogenase 194 314 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2959 Pvu-Chr3 51328145 51330074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2959 10 357 Monolignol Biosynthesis Gene Families AT4G37990 67.622 7.91e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2959 - - gmx:100816901 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2959 3 51328145 51330074 Pvu3g2959 3 51328145 51330074 ECH
Pvu2g1492 2 28120286 28122429 Pvu3g2959 3 51328145 51330074 PCT