Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2958 ATGGCTATAGCAGATGATAGGCAGCGACTCATGCCAACAGCAGAAGATAGATCTACAGGGCAACCCCTTGCTTATCCTGAAGCTGTTCTAATCACCCATCCCAGTAACCCTGAACTTCAAGGAGAGGTTGATGACAAATATCAATACTCTTGTGCTAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAAGACTAATAACTCAGTTGGCTTTTGGATGATCACACCAAGTAATGAGTTTCGTAGTGGTGGTCCAATTAGGCAAGGCCTCACTTCTCATGTTGGCCCTGTCACCCTTAATATACTTCATACCACTCACTACGCTGGGAAGGAAGTGACCATGAGATTACACGAAGGGGAACCCTTCAAGAAAGTTTATGGTCCTGTTTTTGCTTATCTCAATTCAGTTTCTGGAGTTCATGGCTCAGAGCAAGTCCTCTGGAGTGATGCTGTACTACAGCTATCTGAGGAAGTCAATAGATGGCCTTATGATTTTCCTAAGTCAGAGGATTTTGTCCCAGCCAATAAACGGGGAAGAGTGGAAGGACGATTACTTGTTCAAGACAGACACATTAAAGGAGGGAAATTTGTATATGGCCACAATGCTTATATTGGTTTGGCTCTGCCCGGAGATGTGGGATCATGGGAAAGACAAAGCAAGGGTTACCAATTCTGGTCTCGAGCTGATAAAGTTGGCAACTTCACAATTGAAAATATTGTACCAGGAGACTACAATTTATATGCATGGATTCCTGGTATTTTTGGAGACTATAAATATAGCACTATCATAACCATAACACCAGGATGCATTATCCAATTAGGTTCACTCATATACAATCCTCCAAGAAATGGACCAACTGTGTGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTCATAAACCGATTATACATTGGGAAACCATTACACAATTTCAGACAATATGGATTATGGAACCGCTACAATGAGTTATATCCAAATGAGGACCTCACTTACAATGTTGATGTGAATGATTATAGCAGAGATTGGTTTTATGCTCAGGTTCCCAGGAAAATAGGAAACAACACATTTCAGCCAACAGCATGGGAGATTAAATTCCATCTCCCATTTGTTATGAGAGGCAGCTACACATTGCGACTGGCCTTGGCCTCAGCTACACGTTCTAAGCTGGTGATTAGGTTCAATAACCCTTTGGATCGTCCTCCACACTTTTCTACTGGATCAATAGGTCAAGATAATGCCGTAGCAAGACATGGCATCCATGGATTGTATTGGCCTTACAGTGTTGAAGTAAGAAGCAATGTATTAGTGGAAGGAGTGAACACCATTTATCTGAGGCAACCAAAAGTTACAAGTCCTTTCCAAGCCATTATGTATGATTACATCCGTTTGGAAAGACCTGAAGCATAG 1449 0.4203 MAIADDRQRLMPTAEDRSTGQPLAYPEAVLITHPSNPELQGEVDDKYQYSCANKDNKVHGWINLDSKTNNSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYAGKEVTMRLHEGEPFKKVYGPVFAYLNSVSGVHGSEQVLWSDAVLQLSEEVNRWPYDFPKSEDFVPANKRGRVEGRLLVQDRHIKGGKFVYGHNAYIGLALPGDVGSWERQSKGYQFWSRADKVGNFTIENIVPGDYNLYAWIPGIFGDYKYSTIITITPGCIIQLGSLIYNPPRNGPTVWEIGIPDRSAAEFHVPNPYPNLINRLYIGKPLHNFRQYGLWNRYNELYPNEDLTYNVDVNDYSRDWFYAQVPRKIGNNTFQPTAWEIKFHLPFVMRGSYTLRLALASATRSKLVIRFNNPLDRPPHFSTGSIGQDNAVARHGIHGLYWPYSVEVRSNVLVEGVNTIYLRQPKVTSPFQAIMYDYIRLERPEA* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2958 482 SUPERFAMILY Galactose mutarotase-like 44 140 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pvu3g2958 482 Pfam Polysaccharide lyase family 4, domain II 204 275 IPR029413 -
Pvu3g2958 482 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g2958 482 Pfam Polysaccharide lyase family 4, domain III 289 477 IPR029411 -
Pvu3g2958 482 SUPERFAMILY Galactose-binding domain-like 286 478 IPR008979 -
Pvu3g2958 482 SUPERFAMILY Starch-binding domain-like 175 276 IPR013784 GO:0030246
Pvu3g2958 482 CDD RGL4_C 291 478 - -
Pvu3g2958 482 CDD RGL4_M 179 279 IPR029413 -
Pvu3g2958 482 Gene3D - 287 478 - -
Pvu3g2958 482 Pfam Rhamnogalacturonate lyase family 1 43 IPR010325 -
Pvu3g2958 482 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 481 - -
Pvu3g2958 482 Gene3D - 17 128 IPR014718 GO:0030246
Pvu3g2958 482 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 481 - -
Pvu3g2958 482 CDD RGL4_N 1 140 - -
Pvu3g2958 482 Gene3D - 175 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2958 Pvu-Chr3 51322940 51325509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2958 1 480 Polysaccharide Lyase AT1G09890 56.936 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2958 K18195 - gmx:100792575 848.966