Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2957 ATGAAGGGGAGGGTGGTGAGAAAGAGGAGCAAACGATTTTTCTTGCTTTGCTGGTTAGGATTGACTCTTCGGTTGGTTTTCTTACTCGGTGCCTCTTCTGAGAAGACATCATTTAGATTTTTATTTGCGTGCATGCCCTTCATCTCCAGAAGAACGCTGAGGGAGAGCAACCCCTCGCAATGGACATCTTCTAATTCTACGGTGATTCTGAATACAAAGAAGCGTCAACAGTTGGTGGTTGACAATGGTATTGTTTCTGTCAAATTTTCAAGACCGGAGGGTTACATTCTTCAAATGTCATATAAAGGAATTAACAATATACTCGCAGATGAAAACGAAGAACAAGATAGAGGGTACCTGGACGTGGTTTGGAATACGCCAGGAAAGTCTAGTAATTTTCAAAGAATCGTCGGGACAAATTTTTCTGTTATAGCAGCTGACGAGAATATGGTTGAGCTTTCATTTTCAAGAACATGGACATCATCCATGAATGGCTCAAGTGTCCCCATGAACATTGACATTAGATACATTTTGCGAAGTGGTGATTCTGGATTTTATTCATATGCAATATTTGATCGCCCTGAAGGATGGCCTGCGGTGGAGATTGACCAAATTAGGATCGTTTTCAAACTCAAGAAATCCAGGTTCAACTATATGGCAATGGCGGATGATAGGCAAAGAAAGATGCCAACGAAGAGAGATAGAGAAACTGGTCAAATCTTGGCATACCCTGAAGCAGTTCTATTAACCAGACCAGTCAACCCTGAATTCAGAGGAGAGGTGGATGACAAATACCAGTACTCATGTGAAAACAAGGACAACACTGTTCATGGATGGGTGAGTGATGATGGCAATGCACCCGTGGGTTTCTGGATGATAACCCCAAGTAACGAGTTCCGCAATGCTGGGCCCATCAAGCAAGACCTTACTTCACATGTTGGCCCCATTACCCTCCAGATGTTTGTGAGCACTCATTATGCTGGGAAGGAGGTAACCATGGCCTTTCAAGAAGGGGAGGCTTATAAAAAGGTTTTCGGCCCTGTGTTCGCCTACGTTAACTCTGCTTCACGCGAGGATGGAACACTATCCCTCTGGTCAGACGCTGTGCAGCAGCAAGCCAAAGAAGTCAGAAATTGGCCTTATGAATTTCCTAAATCAGAAGATTTCGTTCCACCCAGTCAGAGGGGAATAGTTTTGGGAAGATTACTAGTGAAAGATAGTTACTTCAGAGGAGGTAGACTTCTGTATGCTAACAATGCTTACGTTGGTCTAGCTTTGCCTGGAGATACAGGGTCATGGCAAACAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCCGATACAAAGGGTTTTTTCCTGATTAATAATATTGTTCCCGGTGACTACAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATACAATGTTACAATCACCGTCTCAAAGGGAGGAGTGATCACATTGGATTCACTTGTGTATGTTCCACCAAGAAGTGGACCAACCATATGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCTATGTACCAGACCCTTACCCTACGCTCATGAACAAATTATACAACGAACAGCACAGTGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATATCCAAATGATGATCTTGTTTACACTGTTGGTGTTAGCAATTATAACAAGGATTGGTTTTATGCTCACGTTACAAGAAACGCAGGAAATAAGACATACCAGCCAACGACATGGCAGATTATATTTGAACATCCAGATCAAATAGTAAGAGGAAACTACACATTGCAACTGGCATTGGCATGTACCAATGATGCTGACCTGCAGGTTCGTTTCAATGACCCTGGAGCTGATCCTCCAGACTTTGCAAGTGGGAAAATAGGAGGAGATAGTGCCATAGCAAGGCATGGTTTGCATGGATTGCATAGGTTGTTCAGCATTAATGTACCAAGTGATCGAATTTTGAAAGGAACAAACACCATCTATCTGAAGCAATCAAGAGCAAGGAATCCTTTTCAAGGAGTAATGTATGATTATATCCGTCTAGAACGACCTCCATTGACATTGATATGA 2106 0.4288 MKGRVVRKRSKRFFLLCWLGLTLRLVFLLGASSEKTSFRFLFACMPFISRRTLRESNPSQWTSSNSTVILNTKKRQQLVVDNGIVSVKFSRPEGYILQMSYKGINNILADENEEQDRGYLDVVWNTPGKSSNFQRIVGTNFSVIAADENMVELSFSRTWTSSMNGSSVPMNIDIRYILRSGDSGFYSYAIFDRPEGWPAVEIDQIRIVFKLKKSRFNYMAMADDRQRKMPTKRDRETGQILAYPEAVLLTRPVNPEFRGEVDDKYQYSCENKDNTVHGWVSDDGNAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLQMFVSTHYAGKEVTMAFQEGEAYKKVFGPVFAYVNSASREDGTLSLWSDAVQQQAKEVRNWPYEFPKSEDFVPPSQRGIVLGRLLVKDSYFRGGRLLYANNAYVGLALPGDTGSWQTESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTITVSKGGVITLDSLVYVPPRSGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQHSDKFRQYGLWERYTDLYPNDDLVYTVGVSNYNKDWFYAHVTRNAGNKTYQPTTWQIIFEHPDQIVRGNYTLQLALACTNDADLQVRFNDPGADPPDFASGKIGGDSAIARHGLHGLHRLFSINVPSDRILKGTNTIYLKQSRARNPFQGVMYDYIRLERPPLTLI* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2957 701 Pfam Rhamnogalacturonate lyase family 65 261 IPR010325 -
Pvu3g2957 701 CDD RGL4_M 394 494 IPR029413 -
Pvu3g2957 701 CDD RGL4_C 506 694 - -
Pvu3g2957 701 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 70 697 - -
Pvu3g2957 701 Pfam Polysaccharide lyase family 4, domain III 504 693 IPR029411 -
Pvu3g2957 701 Gene3D - 61 365 IPR014718 GO:0030246
Pvu3g2957 701 SUPERFAMILY Galactose mutarotase-like 72 357 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pvu3g2957 701 SUPERFAMILY Starch-binding domain-like 390 494 IPR013784 GO:0030246
Pvu3g2957 701 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 70 697 - -
Pvu3g2957 701 Gene3D - 390 493 - -
Pvu3g2957 701 CDD RGL4_N 77 356 - -
Pvu3g2957 701 Gene3D - 501 694 - -
Pvu3g2957 701 SUPERFAMILY Galactose-binding domain-like 501 694 IPR008979 -
Pvu3g2957 701 Pfam Polysaccharide lyase family 4, domain II 418 490 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2957 Pvu-Chr3 51313075 51318258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2957 74 696 Polysaccharide Lyase AT1G09890 55.272 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2957 K18195 - gmx:100776664 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1489 2 28069465 28075642 Pvu3g2957 3 51313075 51318258 PCT