Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2949 ATGGAGCTTTCTCAGCTTGGTTTCCTTGATGAATTGGTAGCTCCAAGAAGAGATACATGGAATGCTTTCTCCACTGGTTTCTTGGACCTGTTGTCTAATGGTTGGACTTTTGATACTTTTCTTGAGAACCCATCTTTGGCCACCTCAAACTCTCTATTTGGTGCATTTTCAGCACCATTAGACCGCAGATCTGAATGCCCTTTCATCAATGATGTACCACCATACCCATTTGCAGATGGCTTTGCAATGCCATTGCCAGAGCTTCACCCTGGGAACGATGATCCCCCACCTCCACTCCCACCCACAATGGAGGATAAAGAGATTGCCTTTCATGACAACAACAACAACAGCAACAACTTTGAAGAAACCAAGGGTGTCTGCAAAGTTGAGGAACAGGGCTCAGAAATTCCACTCTTCAACATAGGCATGTCTGATGATGGAGAGAGAAAACCCAAGACCAAAAAGCTAGAGGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAAATCAGCAAGATGGACAGAACCTCTATTCTTGGGGATACTATAGACTATATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAAGAGGAAGAGGTGGAAGGGGGCACAAGTCAGATTAATCTGTTGGGCATTTCAAAGGAACAAATCAAGCCAAATGAAGCAATGTTTGATGTTGAAAGGAGAGACCAAGACACTAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTAGGTGATCAGAGAAATTGCATTGGCCCCGAGGAGATAAAACAATCACTATTCAGAAATGCAGGGTTTGTTGGGAAATGTCTCTAG 981 0.4393 MELSQLGFLDELVAPRRDTWNAFSTGFLDLLSNGWTFDTFLENPSLATSNSLFGAFSAPLDRRSECPFINDVPPYPFADGFAMPLPELHPGNDDPPPPLPPTMEDKEIAFHDNNNNSNNFEETKGVCKVEEQGSEIPLFNIGMSDDGERKPKTKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEVEGGTSQINLLGISKEQIKPNEAMFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSMEASCSEVGDQRNCIGPEEIKQSLFRNAGFVGKCL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2949 326 CDD ACT_UUR-ACR-like 252 292 - -
Pvu3g2949 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 219 IPR036638 GO:0046983
Pvu3g2949 326 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Pvu3g2949 326 MobiDBLite consensus disorder prediction 139 163 - -
Pvu3g2949 326 MobiDBLite consensus disorder prediction 145 163 - -
Pvu3g2949 326 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 326 - -
Pvu3g2949 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 326 - -
Pvu3g2949 326 Gene3D - 146 208 IPR036638 GO:0046983
Pvu3g2949 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Pvu3g2949 326 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2949 Pvu-Chr3 51258350 51260673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2949 9 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.672 2.16e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2949 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2949 - - gmx:100790319 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1471 2 27857684 27859544 Pvu3g2949 3 51258350 51260673 PCT