Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2947 ATGTCTCCGCCTCTGTTGGTTACTGAAGATGAAGGGCAGAGCAATGCCTCGATGGTAGCGTCTGCATCTTCACCATCCATGGAATGTTTCTCCCCACATGAGGCTAGATTCAAAGAACGCAATTACCTGGGATTCTCAGATTGCTCTTCGGTGGAAAGTTCTACTGTCCCGAGCTTGTCTAATGAGAAAAAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGAATCCGGATCTTTTCCCATTGACCTCATCAAAACTTGACGAGAAACCACTGTTCCCCTTGCTTCCTACAAAGGATGGAATCTTCGCATTGTCCCAGAAAACTGTGGTCTCGGGCAATAAAAGGGGTTTTGCTGACACAATGGACACTGAGTTTCCTGGAAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGGATTCAGCCAACCACAGTGAAAGAACTACCAAGCAAGGTGTTACAGGAACGTCCTTGTGCAGCAAATGGAACTGGCCTTAACCATACAGGAGCTTCTATCAGTGGCAGTGCACCTGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCCGCTCTGTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTGAGAAATTATACAACATACCAAGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGTGCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCGGAATATGTACTTACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCGTGGGATATGTTCATTGACACATGCAAAAGGCTTAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCAAGGGCCATGGAAAAATCCAGGAGCAGGAGCTAG 1047 0.4623 MSPPLLVTEDEGQSNASMVASASSPSMECFSPHEARFKERNYLGFSDCSSVESSTVPSLSNEKKNLNLKATELRLGLPGSQSPERNPDLFPLTSSKLDEKPLFPLLPTKDGIFALSQKTVVSGNKRGFADTMDTEFPGNAGINMMLSPKPSGIQPTTVKELPSKVLQERPCAANGTGLNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGVPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2947 348 Pfam AUX/IAA family 71 339 IPR033389 -
Pvu3g2947 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Pvu3g2947 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Pvu3g2947 348 PANTHER AUXIN-INDUCED PROTEIN 2 341 - -
Pvu3g2947 348 Gene3D - 225 341 - -
Pvu3g2947 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 341 IPR003311 GO:0005634|GO:0006355
Pvu3g2947 348 MobiDBLite consensus disorder prediction 7 27 - -
Pvu3g2947 348 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2947 Pvu-Chr3 51227227 51232145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2947 230 342 B3 DNA Binding Superfamily AT1G30330 27.434 1.14e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu3g2947 AUX_IAA 5.9e-89 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1468 2 27811934 27816666 Pvu3g2947 3 51227227 51232145 PCT