Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2942 ATGACGGAGTACCGGTCGCCGCCCACAATGAATCTCTGGACCGACGACAACGCTTCCGTCATGGAGGCCTTCATGAGCTCCTCCGATTTCTCCTCCCTTTGGCTGCCAACACCGCAATCCGCTGCCTCTACCACCACTCCGGGAGCCGACACTGCCAGAGCCCTGCCGCCACCTCCGCCGTCGCAGTCCCAGTCCCTTTTTAACCAGGAGACCTTACAACAGCGGCTGCAAACGCTGATCGAAGGCGCCGAAGAGAGCTGGACCTACGCCATTTTCTGGCAATCTTCTTATGACTACTCCTCCAGCACTTCCCTTCTCGGTTGGGGTGACGGATACTACAAGGGAGAGGAGGACAAAGGAAAAGGAAAAGCCCCCAAAGAGATGTCGTCGGCGGAGCAGGACCACCGTAAGAAGGTTCTCCGCGAGCTCAATTCGTTGATTTCCGGCCCTTCCGCTTCCGCTGATGACGTCGACGAAGAGGTATCCGACACTGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTCTCAGCGGAAGCGGCCTCCCGGGCCAGGCTTTTCTTAATTCCAGCCCGGTTTGGGTCGCCGGGGCTGACCGGTTATCCGATTCGACGTGCGAGCGGGCTCGCCAGGGGCAGGTCTTTGGGCTTCAGACTCTGGTTTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCTTCTACGGAGGTGATTTTCCAGAACTCCGATCTCATGAAGAAAGTGCGGGATTTGTTCAACTTCAACAACCCAGACGCGGGTTTCTGGCCGTTGAATCAGGGCGAGAACGACCCTTCCTCACTCTGGCTCAACCCTTCTTCCTCGATTGAAATCAAGGACACCTCTAACGCCGTTGCACTCGTTTCAGCGAATGCATCACTGAGCAAAACCATGCCGTTCGAAACCCCTGGTTCCAGCACTCTAACAGAAACCCCTAGTGCCGCCGCCGCAGCTCACGTCCCCAATCCCAAGAACCAGGGTTTCTTCCCCAGGGAATTGAACTTCTCGAACTCCTTAAAACCCGAATCCGGTGAAATTCTGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAACGGGAGTTACTTCCCCGGTGTTGCGGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGCTTCTCGCAGCAGCATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTGATTATACCGGCTTCGAATATAAAATCTGGTGCCGTTGCTGGTGGTGGTGCCAGCGGCGGTGATTCCGAGAACTCGGATCTGGAAGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAGCCGGAGAAACGGCCCCGGAAGAGGGGTCGGAAGCCGGCGAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAACGGTTCTACGCGCTTCGTGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCATCGCTCTTAGGCGATGCCATATCCTACATAAACGAGCTGAAGTCGAAGCTGAGTGAGCTGGAATCAGAGAAAGGGGAATTGGAGAAGCAATTGGAGTTGGTGAAGAAGGAGCTTGAGCTGGCAACTAAAAGCCCTTCTCCTCCACCTGGGCCACCTCCATCCAACAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAGTTAGAGGTGAAGATCATAGGGTGGGACGCCATGATAAGGATCCAATGCAGCAAGAAAAACCACCCTGCGGCCAGGTTGATGGCTGCGTTGAAGGAGCTGGACCTTGACGTGAATCATGCCAGCGTATCCGTGGTGAATGATTTGATGATCCAACAAGCCACCGTGAATATGGGAAACCGGTTTTACACTCAGGAACAGCTCCTGTCGGCGCTCTCCTCCAAAATTGGCAATGCACTATAG 1929 0.5521 MTEYRSPPTMNLWTDDNASVMEAFMSSSDFSSLWLPTPQSAASTTTPGADTARALPPPPPSQSQSLFNQETLQQRLQTLIEGAEESWTYAIFWQSSYDYSSSTSLLGWGDGYYKGEEDKGKGKAPKEMSSAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFLSGSGLPGQAFLNSSPVWVAGADRLSDSTCERARQGQVFGLQTLVCIPSANGVVELASTEVIFQNSDLMKKVRDLFNFNNPDAGFWPLNQGENDPSSLWLNPSSSIEIKDTSNAVALVSANASLSKTMPFETPGSSTLTETPSAAAAAHVPNPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPGVAAEETNKKRRSPASRSSIDDGMLSFTSGVIIPASNIKSGAVAGGGASGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLELVKKELELATKSPSPPPGPPPSNKEAKETTSKLIDLELEVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVNHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGNAL* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2942 642 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Pvu3g2942 642 MobiDBLite consensus disorder prediction 427 468 - -
Pvu3g2942 642 MobiDBLite consensus disorder prediction 534 555 - -
Pvu3g2942 642 Pfam Helix-loop-helix DNA-binding domain 462 507 IPR011598 GO:0046983
Pvu3g2942 642 MobiDBLite consensus disorder prediction 36 65 - -
Pvu3g2942 642 MobiDBLite consensus disorder prediction 36 50 - -
Pvu3g2942 642 PANTHER MYC 11 638 IPR045084 GO:0003700|GO:0006355
Pvu3g2942 642 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 528 IPR036638 GO:0046983
Pvu3g2942 642 CDD bHLH_AtAIB_like 455 531 - -
Pvu3g2942 642 SMART finulus 464 513 IPR011598 GO:0046983
Pvu3g2942 642 Gene3D - 450 538 IPR036638 GO:0046983
Pvu3g2942 642 MobiDBLite consensus disorder prediction 411 468 - -
Pvu3g2942 642 PANTHER TRANSCRIPTION FACTOR MYC2 11 638 - -
Pvu3g2942 642 Coils Coil 497 538 - -
Pvu3g2942 642 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2942 Pvu-Chr3 51176436 51179375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2942 1 639 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.164 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2942 bHLH-MYC_N 2.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2942 K13422 - gmx:100790854 908.672