Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2929 ATGGCCGCTGTTGCCAACCCCAGAACTTGGATTCCATACATGAACAGCAAAGACTGTTCTCAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCACCTTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCTCCTCTTGTCATTGCAATCATTGGAATCATGGCCACTGCTTTTCTTCTGGCTAGTTACTACACTCTCATATCCAAGTACTGTGGCCCCAGAGAGTCTGCACGCAGAGACCCAAATGAAAACTTGCAAGCCACTCACAATCCCTCTCTCCACGAACCATGGAACGCTTCAAGCACCGGGCTTGACGAGGCTCTGATCAAATCCATTGCAATTTTCAAGTACAAGAAAAGGGATGGTGGTTCTGTTGCAGTCACGGATTGTTCAGTTTGTCTGAGCGAGTTTGAAGACGATGAAAGTGTTAGACTGTTGCCAAAGTGCAGCCACGTTTTCCATGCCCCTTGCATCGACACTTGGCTCAAGTCTCACTCTAGCTGCCCCCTTTGTCGTGCTGCCATATTCACCTTCAACAACGGTTCTGTTCCTCGGGCTCATACCCCAGAGGAAGAGGCTCCTTCTTTAAGGAACAATGAAACTTTTTCTGAGAGTGAAAGTGTTGGAAGTGGCAATGAGTATGGAGTGGTGGTGATGTTGGAAGAAGAAGGCATACACCATGCCAGGGCTTATCCAAAGCCTGCATTGCGTGCTTTTAGTGACTTGAGTAGCTTGCAGGGAAGGCACAGAGTGATTGAGATAAGAGATGAAGTGTGTGAATCCGTTGGTAGGTCAGTGTCAATGGACCATTCGTTTCAGAGGCATGAAGAGGAAGATTCATATGTGGAAGGGTGTTCTACCACTGAACCTGGCCCTTCAAAGAGATCACGCAGAGAGAGTTACAAAACAAGGGTGCTGCATTGTGTGTTGAGTCCAATTGCAATGAAGAGATCGTTTTCCAGCCACAGATTCTCACTGGGCAAAAGTAGCAGAGCATGGCATGGAACTATACCCATCTGA 1050 0.4695 MAAVANPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGIMATAFLLASYYTLISKYCGPRESARRDPNENLQATHNPSLHEPWNASSTGLDEALIKSIAIFKYKKRDGGSVAVTDCSVCLSEFEDDESVRLLPKCSHVFHAPCIDTWLKSHSSCPLCRAAIFTFNNGSVPRAHTPEEEAPSLRNNETFSESESVGSGNEYGVVVMLEEEGIHHARAYPKPALRAFSDLSSLQGRHRVIEIRDEVCESVGRSVSMDHSFQRHEEEDSYVEGCSTTEPGPSKRSRRESYKTRVLHCVLSPIAMKRSFSSHRFSLGKSSRAWHGTIPI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2929 349 MobiDBLite consensus disorder prediction 287 309 - -
Pvu3g2929 349 SMART FANCL_C_2 136 187 - -
Pvu3g2929 349 SMART ring_2 140 181 IPR001841 -
Pvu3g2929 349 Pfam Ring finger domain 139 182 IPR001841 -
Pvu3g2929 349 SUPERFAMILY RING/U-box 139 188 - -
Pvu3g2929 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Pvu3g2929 349 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Pvu3g2929 349 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 340 IPR044675 -
Pvu3g2929 349 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 340 - -
Pvu3g2929 349 MobiDBLite consensus disorder prediction 196 218 - -
Pvu3g2929 349 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2929 Pvu-Chr3 51068965 51070282 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2929 1 233 C3H Transcription Factor Family AT3G03550 46.667 2.26e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2929 - - vun:114176645 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2929 3 51068965 51070282 Pvu3g2929 3 51068965 51070282 ECH
Pvu2g1446 2 27436057 27437346 Pvu3g2929 3 51068965 51070282 PCT