Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2928 ATGAAAACTCTGGTGGTGGTTTACTTTTCTCAGCAAGTAGGGAAGTTCAGACAGGTTTCAGTTGAAGAGAGAATAACAATGGCTTTAGAAACTCTTCCATCCAATGAGTTTTCCAACTTCATGGTCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGATTCTTCTGAGGCTAGTTTCTTGGAAAGTTTTGGGAACTATCAGGAACATGACCCCTCATTAGATAACTGCTCAATGAGGACACGAAAGCGCCAAGCCAGCGAGCCAGAAGGCATTGACAGGAAGCAGAATGTGGTGGGAGTGCAAGGTAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAGAGAATCACTCACATTACAGTGGAAAGAAACCGCCGAAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCTGAGTCCTACGTCCAGAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAAACACTGGAAGCAAGAAAGCTGCAACTTTTACAGCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGAATCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACCAGGAAAACCCCCGCCCAGCTAACAAAGTTAGTATCTGGTTTCCAAAATCTCCACCTCACTGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTATTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCATCGGCAGTTCATCATTTGCTTGCAAGAATTGAAGAAGAGGCTTTGCTTTGCTGTTGA 981 0.4485 MKTLVVVYFSQQVGKFRQVSVEERITMALETLPSNEFSNFMVYDTISATPFSSHDSSEASFLESFGNYQEHDPSLDNCSMRTRKRQASEPEGIDRKQNVVGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEARKLQLLQQEVAQTNENTAISKLMQPPFAQFFLYPQYTWSQNPNKYTSKTKAAIADIEVTLIETHANLRILTRKTPAQLTKLVSGFQNLHLTVLHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIASAVHHLLARIEEEALLCC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2928 326 MobiDBLite consensus disorder prediction 76 92 - -
Pvu3g2928 326 PANTHER TRANSCRIPTION FACTOR BHLH71 27 325 - -
Pvu3g2928 326 CDD bHLH_AtFAMA_like 126 185 - -
Pvu3g2928 326 MobiDBLite consensus disorder prediction 72 121 - -
Pvu3g2928 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 192 IPR036638 GO:0046983
Pvu3g2928 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Pvu3g2928 326 Pfam Helix-loop-helix DNA-binding domain 124 175 IPR011598 GO:0046983
Pvu3g2928 326 Coils Coil 171 191 - -
Pvu3g2928 326 SMART finulus 129 180 IPR011598 GO:0046983
Pvu3g2928 326 Gene3D - 115 196 IPR036638 GO:0046983
Pvu3g2928 326 PANTHER MAX DIMERIZATION, MAD 27 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2928 Pvu-Chr3 51052186 51055369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2928 115 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.143 1.16e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2928 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2928 - - pvu:PHAVU_003G284500g 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2928 3 51052186 51055369 Pvu3g2928 3 51052186 51055369 ECH