Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2926 ATGTCTTCGGTGGGGTACGACCCGGCACCGGCCGCGCCGCCGTACAACACCCCACCCGCGCTGATCGCCTTCACGCTGGGCGTGCTGGTGGTGTGCTTCGTGGCGTTCAGCATCGTCTACCTCTGCAAATACTGTTTCGCCAGCGTCATCCAGACCTGGACCTTCCAACGCACCGCTTCGGGTTCCCTCATCCGTCTCACGCCGCACCGGTCTCCTCCGAGGGGCCTTGACCCGTCGTTGCTGCAGGTCTTCCCCACCTTCGCCTACTCCTCCGTCAAGGACCTCCGCAAGGATCAGAACTACGGCTTGGAATGCGCCATCTGTTTGGTGGAGTTCGAAGACGACAACATGCTTCGCCTCTTGACGCTCTGCTGCCACGTCTTCCACCGGGACTGCATCGACCTCTGGCTCTGTTCGCACAAAACCTGCCCTGTTTGCCGCAGAGACCTCGACTCTGCCCCCGACCAAACCCTCAAACCCGGCAACGTCGTCGTTTCGTCGACCAGCGGCGAGTTACGCATTGATGTGAGAGAAGAGGGTCTTGATTCTTGTGATGGCAACCAAATAGAAGAGCAACAGCAACAAGAACTTGAACAAGAACGTGAAAAAGAAGATGAAAAACATGAGGTGGTTGAGGAACACGTGCGGTCGCATTCGACGGGGCACTCGATAGTGATGATTAGAGAGGAGGGGGCTGAGGAGAGAAAGGATGATGAGAAGTACACGTTGAGATTGCCGGAGCATGTTTTGAGAGTGAGGCATGATAACAAGCATAACTGTACGAGGAGCTGTGCCAGTTTTAAGGACATTACCAAGCTTGATGCTCCTCCTGCACCTTGCAGTAATTGTGGGTTTGTTCAACCCCAATCACCCACTTTCTTCTCCTCCCCAACTAATAGTCAGAAATCTTGA 912 0.5493 MSSVGYDPAPAAPPYNTPPALIAFTLGVLVVCFVAFSIVYLCKYCFASVIQTWTFQRTASGSLIRLTPHRSPPRGLDPSLLQVFPTFAYSSVKDLRKDQNYGLECAICLVEFEDDNMLRLLTLCCHVFHRDCIDLWLCSHKTCPVCRRDLDSAPDQTLKPGNVVVSSTSGELRIDVREEGLDSCDGNQIEEQQQQELEQEREKEDEKHEVVEEHVRSHSTGHSIVMIREEGAEERKDDEKYTLRLPEHVLRVRHDNKHNCTRSCASFKDITKLDAPPAPCSNCGFVQPQSPTFFSSPTNSQKS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2926 303 Coils Coil 187 214 - -
Pvu3g2926 303 MobiDBLite consensus disorder prediction 284 303 - -
Pvu3g2926 303 PANTHER RING-H2 FINGER PROTEIN ATL29 8 271 - -
Pvu3g2926 303 Pfam Ring finger domain 104 147 IPR001841 -
Pvu3g2926 303 SMART ring_2 105 146 IPR001841 -
Pvu3g2926 303 CDD RING-H2_EL5_like 104 147 - -
Pvu3g2926 303 SUPERFAMILY RING/U-box 95 153 - -
Pvu3g2926 303 PANTHER RING FINGER DOMAIN-CONTAINING 8 271 - -
Pvu3g2926 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Pvu3g2926 303 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2926 Pvu-Chr3 51041739 51042650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2926 2 275 C3H Transcription Factor Family AT2G35420 32.971 8.94e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2926 - - gmx:100815505 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1445 2 27429793 27430916 Pvu3g2926 3 51041739 51042650 PCT