Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu3g2925 | ATGGATTACGCTCGAGACGGGAACGTGGTGCAGATAATCACAGGTGGTGGCGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCCGATTGGGCGACGGAGGATGAGTACCGGTTTTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCGCGGTCGGAGCCGCCGAGCAAAAAGTCCCGGAATTCGCAGGATGGGAGCTCGAACCGGTCAAAGGCTATAGGGAAGATGTTCTTCAAGACGAAGCTGTGTTGCAAGTTCAGGGCTGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCACAGCATTGAGGAGCTGCGCCGCCCACCACCGAACTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCGGTGATGGTAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGCCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAGCAATCGAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGACCAGGGGGTTATGCCGGTGGTGGTGGCGGTGGTAGTGGAAATGGTGGTGGTGGTGGTGGGGGCGGTGGTAGTGGAAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGTTGCTAATGCTGCTGGGAATGGGGCTAATTCCAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGGTTCTGTGGTTGGCAGTGACACAAGCAAGGGAGCAGCATCAAAAGCTTCTGCTGATAACGTGGTTGCTGCAGTTACTCCTGTTGCACATTCTGATGTGTATCACATTGGAGTCCCTTCACAGAGGCCTTCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATGA | 1131 | 0.5261 | MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMVEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGNGGGGGGGGGSGNGGGGGGGGGGSGVANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGGSVVGSDTSKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* | 377 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu3g2925 | 376 | SMART | c3hfinal6 | 86 | 112 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | SMART | c3hfinal6 | 161 | 188 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | SMART | c3hfinal6 | 254 | 281 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Pvu3g2925 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 254 | 282 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | Pfam | CCCH-type zinc finger | 165 | 187 | IPR041367 | - | |
Pvu3g2925 | 376 | MobiDBLite | consensus disorder prediction | 295 | 314 | - | - | |
Pvu3g2925 | 376 | Gene3D | - | 154 | 201 | - | - | |
Pvu3g2925 | 376 | SUPERFAMILY | CCCH zinc finger | 252 | 285 | IPR036855 | GO:0046872 | |
Pvu3g2925 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 161 | 189 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | SUPERFAMILY | CCCH zinc finger | 84 | 117 | IPR036855 | GO:0046872 | |
Pvu3g2925 | 376 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE | 241 | 373 | - | - | |
Pvu3g2925 | 376 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE | 25 | 203 | - | - | |
Pvu3g2925 | 376 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 87 | 111 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 255 | 280 | IPR000571 | GO:0046872 | |
Pvu3g2925 | 376 | SUPERFAMILY | CCCH zinc finger | 160 | 189 | IPR036855 | GO:0046872 | |
Pvu3g2925 | 376 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 241 | 373 | IPR045877 | GO:0003729 | |
Pvu3g2925 | 376 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 25 | 203 | IPR045877 | GO:0003729 | |
Pvu3g2925 | 376 | Gene3D | - | 81 | 117 | - | - | |
Pvu3g2925 | 376 | Gene3D | - | 248 | 286 | - | - | |
Pvu3g2925 | 376 | MobiDBLite | consensus disorder prediction | 36 | 61 | - | - | |
Pvu3g2925 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 86 | 113 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu3g2925 | Pvu-Chr3 | 51035481 | 51040126 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu3g2925 | 256 | 284 | C3H Transcription Factor Family | AT1G68200 | 62.069 | 3.66e-07 | 49.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pvu3g2925 | zf-CCCH | 1.2e-10 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu3g2925 | - | - | gmx:100788208 | 620.542 |