Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2925 ATGGATTACGCTCGAGACGGGAACGTGGTGCAGATAATCACAGGTGGTGGCGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCCGATTGGGCGACGGAGGATGAGTACCGGTTTTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCGCGGTCGGAGCCGCCGAGCAAAAAGTCCCGGAATTCGCAGGATGGGAGCTCGAACCGGTCAAAGGCTATAGGGAAGATGTTCTTCAAGACGAAGCTGTGTTGCAAGTTCAGGGCTGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCACAGCATTGAGGAGCTGCGCCGCCCACCACCGAACTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCGGTGATGGTAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGCCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAGCAATCGAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGACCAGGGGGTTATGCCGGTGGTGGTGGCGGTGGTAGTGGAAATGGTGGTGGTGGTGGTGGGGGCGGTGGTAGTGGAAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGTTGCTAATGCTGCTGGGAATGGGGCTAATTCCAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGGTTCTGTGGTTGGCAGTGACACAAGCAAGGGAGCAGCATCAAAAGCTTCTGCTGATAACGTGGTTGCTGCAGTTACTCCTGTTGCACATTCTGATGTGTATCACATTGGAGTCCCTTCACAGAGGCCTTCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATGA 1131 0.5261 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMVEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGNGGGGGGGGGSGNGGGGGGGGGGSGVANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGGSVVGSDTSKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2925 376 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Pvu3g2925 376 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Pvu3g2925 376 SMART c3hfinal6 254 281 IPR000571 GO:0046872
Pvu3g2925 376 MobiDBLite consensus disorder prediction 1 79 - -
Pvu3g2925 376 ProSiteProfiles Zinc finger C3H1-type profile. 254 282 IPR000571 GO:0046872
Pvu3g2925 376 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Pvu3g2925 376 MobiDBLite consensus disorder prediction 295 314 - -
Pvu3g2925 376 Gene3D - 154 201 - -
Pvu3g2925 376 SUPERFAMILY CCCH zinc finger 252 285 IPR036855 GO:0046872
Pvu3g2925 376 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Pvu3g2925 376 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Pvu3g2925 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 241 373 - -
Pvu3g2925 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 25 203 - -
Pvu3g2925 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Pvu3g2925 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 280 IPR000571 GO:0046872
Pvu3g2925 376 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Pvu3g2925 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 241 373 IPR045877 GO:0003729
Pvu3g2925 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 203 IPR045877 GO:0003729
Pvu3g2925 376 Gene3D - 81 117 - -
Pvu3g2925 376 Gene3D - 248 286 - -
Pvu3g2925 376 MobiDBLite consensus disorder prediction 36 61 - -
Pvu3g2925 376 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2925 Pvu-Chr3 51035481 51040126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2925 256 284 C3H Transcription Factor Family AT1G68200 62.069 3.66e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu3g2925 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2925 - - gmx:100788208 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2925 3 51035481 51040126 Pvu3g2925 3 51035481 51040126 ECH