Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2923 ATGGGTAGGTCACCTAGCAGTAGCAGTAACGAGAGTAATGTGAAGAAAGGGCCATGGACAGCAGAAGAAGATGAAAAGCTAATGGATTACATTAGCAAACATGGAAGAGGAACGTGGAGAACACTTCCAAAGCATGCTGGTCTAAATAGGAACGGAAAAAGTTGCAGGTTAAGGTGGGAAAACTATCTGAAACCAGATATTAAGAGAGGAAAATTTACTCAAGAGGAGGAGCTATTCATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCTACAAGTCTTCCAGGGAGAACAGATAACGAGATAAAGAATTATTGGAACACTACCATAAGAAAAAAGCTTCTCCAGAAGGGTATTGATCCAGAAACTCACAGGCCAAGAACAAGCTTGAATCATCTGATGAATCTTTTCCCCTTGCTTGGCATGTCAAATTTGGGCACATCAATGAGTTCTTGGACCAACCCTACTGGTTTACAAGCAGATGTCACTCAATTAGCCAAACTACAACTGCTACAAAATATGCTACAACTTATGAACAACACTTCATTGATCAACATCACTAATCCTTACCTTGTAGACAATCAAATTCTCAACCCACCACTTGATACATTTCTCAATGGGACAAACACTCTCCAAGTTAGAGATCCAATGTTATATGCAAACCCTCATGGTAACAACATACCCAATCTATTCTCTCAGACACACAGTGACTATTCTCTGCAGAATATCTTCAAATCAGGGATAGAAATAGAAAATGAAAGTAAGTATCAAGAAGTTCTTAGTTATACCCAAAACATAAACACTTCACAACAAAATGAAGTAGAAAATTTACTACCAGCATTAGTTGCTTCATGTACTCCAAGGACAACTAGCTTCAACAAAATGGAGAGCAACTATAATGCAGCACAAAAGTCTACACAGTCACCTTTCTCTACAACTTTTGAGGCTTGGGAGAAGTTTCTCATTGATGATGATGATGAAACAAGCAGTTCCTACTGGAAAGAGATTCTAGAGTACGTTTATTCTTAA 1041 0.3833 MGRSPSSSSNESNVKKGPWTAEEDEKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYLKPDIKRGKFTQEEELFIINLHSVLGNKWSKIATSLPGRTDNEIKNYWNTTIRKKLLQKGIDPETHRPRTSLNHLMNLFPLLGMSNLGTSMSSWTNPTGLQADVTQLAKLQLLQNMLQLMNNTSLINITNPYLVDNQILNPPLDTFLNGTNTLQVRDPMLYANPHGNNIPNLFSQTHSDYSLQNIFKSGIEIENESKYQEVLSYTQNINTSQQNEVENLLPALVASCTPRTTSFNKMESNYNAAQKSTQSPFSTTFEAWEKFLIDDDDETSSSYWKEILEYVYS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2923 346 Gene3D - 70 136 - -
Pvu3g2923 346 Gene3D - 15 68 - -
Pvu3g2923 346 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pvu3g2923 346 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pvu3g2923 346 MobiDBLite consensus disorder prediction 1 16 - -
Pvu3g2923 346 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pvu3g2923 346 SMART sant 68 116 IPR001005 -
Pvu3g2923 346 SMART sant 15 65 IPR001005 -
Pvu3g2923 346 CDD SANT 71 114 IPR001005 -
Pvu3g2923 346 CDD SANT 18 63 IPR001005 -
Pvu3g2923 346 PANTHER MYB TRANSCRIPTION FACTOR 1 343 - -
Pvu3g2923 346 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g2923 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 - -
Pvu3g2923 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pvu3g2923 346 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pvu3g2923 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pvu3g2923 346 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2923 Pvu-Chr3 51013011 51014592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2923 1 342 MYB Transcription Factor Family AT5G16770 44.225 1.32e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g2923 Myb_DNA-bind_6 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2923 K09422 - gmx:100803906 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1438 2 27324613 27326554 Pvu3g2923 3 51013011 51014592 PCT