Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2913 ATGGAAGCTAGAAATGGGTTAGAATATTTGAAACATAAAAGGCTTCAGCGAGCAAAATCTGCTACTGCCAGTGCCACTGCAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGAGGTTCTGCATCATATAGTATGAGGTTGCACGCTGATGCAGGTAGTTTTTCCCAGCGGAAGGTGGATAAGTTTGACACAAGTGATCTGGCATGGACTGAGAAAATTCCAGAGTGTCCTGTATATCATCCAACGAAGGAGGAATTTGATGATCCCTTGCTTTATTTACAAAGAATAGCTCCCGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAACAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCTGAATGGGATACCGAAGACAAAGTGGTTTTTTTCATGAGTGGGATAAATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACGGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGCGAAAAGCAAATGGAATTTGAAGAAATTTTCATGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTTGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCATTGGATTTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGGGAAGACGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGTCAAAGATATGCACTTCTTCACAGGGTTCCTTTGCTGCCCCACGAAGAACTTTTATGCAAAGAAGCAATGCTTTTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTCTTGATGAAATCAAGGGCATGTAGAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATATAGCTTATGTTGACTGTAAATGTCACGAGCATCCAGTATGCCTTCGCCATGAATCTCTTGACTTCACCTGTGGGACCAAACGCACACTTTATCTTAGGGAAGATACTTCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTGAGCAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCTTATTGTGAGGTGAAATTTGATTCTGTTACTAATTTTTGTACCAACCCAAAGCTGTCAACAAATAATCAAGAGCGTATACGAAGTCAATTTGTTTCTAGACCTGAAGTATCTTCTGCTGCATCTACGCTATGTTCTCTTTCCAAACCTCCTATCGATGAGGTGCATGCTAACTTTAAATTAGGTAGTCCTGATTCTGAAGAGAATTGTGGAATATCCAATAATGCTTCTGACTCTTATCAATCCCCTGCTCGGTATGAATGCCCTGATAAATCTATGGGCAATGTGCATAGATTGGAGAAGAAGAAGCTCATTGTGGATAACAAGAGTGATGATTCAGATTCAGATGTTTTTTGGGTTAAGCGCCGTTCTTCTCTTAAGGCGGCGGAGAGGAGAAATATAAGCGGTGCTACGTTTTCAACAAATTCTGTACAGCAGGAACTCAAACAGTTGAAGAAAGACCTTCGCGATGGAAGGAGTGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAACGAGTTACAAATTTAGTGGCGGCAAGGTTAATGGTGAAATATCCTCGAGGGACAAATTTGCTAGGGGAAATAACATTCACGTATCCGTAAGATATAAGAAGGGAAGTAATGAGGAAGTTAGTAGACGACGACATCATTGCCACACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCTTTAAAGCTCAGAGAGCAGATTGA 2433 0.4102 MEARNGLEYLKHKRLQRAKSATASATATNIANMMNRSGGDALRGSASYSMRLHADAGSFSQRKVDKFDTSDLAWTEKIPECPVYHPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGINYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLAKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALDFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRVPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACRSVSSHSQGTILCSLCKRDCYIAYVDCKCHEHPVCLRHESLDFTCGTKRTLYLREDTSDMEAAAKRFEQEDGILKEILEQMKSEKNIYSCPLSNMFQMAEANGYTPYCEVKFDSVTNFCTNPKLSTNNQERIRSQFVSRPEVSSAASTLCSLSKPPIDEVHANFKLGSPDSEENCGISNNASDSYQSPARYECPDKSMGNVHRLEKKKLIVDNKSDDSDSDVFWVKRRSSLKAAERRNISGATFSTNSVQQELKQLKKDLRDGRSVPAVDMSKRKETSYKFSGGKVNGEISSRDKFARGNNIHVSVRYKKGSNEEVSRRRHHCHTDRLLHSIEVAPKRFKAQRAD* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2913 810 Pfam JmjC domain, hydroxylase 258 381 IPR003347 -
Pvu3g2913 810 Gene3D Cupin 74 403 - -
Pvu3g2913 810 Pfam C5HC2 zinc finger 478 527 IPR004198 -
Pvu3g2913 810 Pfam jmjN domain 82 114 IPR003349 -
Pvu3g2913 810 SUPERFAMILY Clavaminate synthase-like 159 414 - -
Pvu3g2913 810 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 42 807 - -
Pvu3g2913 810 SMART JmjN_1 80 121 IPR003349 -
Pvu3g2913 810 SMART cupin_9 228 398 IPR003347 -
Pvu3g2913 810 ProSiteProfiles JmjC domain profile. 228 398 IPR003347 -
Pvu3g2913 810 ProSiteProfiles JmjN domain profile. 81 122 IPR003349 -
Pvu3g2913 810 PANTHER LYSINE-SPECIFIC DEMETHYLASE 42 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2913 Pvu-Chr3 50927993 50939970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2913 78 546 JUMONJI Transcription Factor Family AT2G34880 32.044 1.11e-66 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu3g2913 JmjC 6.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2913 - - vra:106765852 1390.17