Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2911 ATGGACAATGAATCTAATCCCACACTCCATGTTGGTACTGCTGCATTTTCACTTCCCCCAAAAGGCAGGAGTGAGGACAGGGATGAACAAGAGAAGCAAGGAAGTCCAAAAAGACAGAAGAGAGATGAGGTTGCTGAGGAGTTCAAGAATGAGTTTCAGGAGAATATCAATATCGATGAGGGTGATAACTCTGAAGAAAGACATGAAGAAACACAAGAGAAAAAGATGGAAGTTTTGATGGACACCACATCAAATGCTCAAGAATGTGACTCAAAAAATGCTGAAAATGATTCTTCTAGTCATAGTTCATATGACAGCAACCATGATGACAATAACTCTGATTTTATTGACAAGCCACATATGGCTACAAATCCTGTGAAAAGTTCAGAGAACAGTGAGGAAGAAATTGAGGAAAACGCCTCTAAAACTGGTCAAGTAAATCCTGAAATGCTAGCTACTCTGAAAGAACGAAATGCTGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGAGCTGATCTGGAAATTCTTTTCAAAGATTGTGGAGAGATTGTTGATGTTCGTCTACATACGGATTATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCAACAGAAGAAGCAGTGCTAAAAGCACTTAAGTTAAATAATACAGAATTGTTGAGGTGTCGCATCAGAATTGGTGTAGCTCCAGCAAGGCGTAAATGCACCCCCAATAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGCTCAAAGATTTCAGAGGATTGTGAACAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGAAAATTCCCAAAGTGCTAGATACTTGGAAACAACAAAATGCTACATCAAAGACAATATGTGCTAGAAATTTGTCTTACAGTGTGGAGAGCGATGATATCGAAATACTTTTCAAAGAGTGTGGAGAAATTGTTGATATCCGTCTACAAACAGATCATGAAGGGAGGTCTAGAGGTTTTGGGTATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAAGCTCTTGAGTTGGATAATACAAAATGGTTTGGACGATGGATTAGTGTTGTTTTAGCTCAAGAAAAGGGTGAATATGCTTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGTGCGAAAGAATCGAGCCCTTCAAAAGGACCGGGAGTTCAGAGTACTGTGAGGAAGATACTGAGGGAAAAGTCTTAAAAGATCCTTGGAAAAGTTCTAGCTGGTTGGCTACTATGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGTATTGTTTATGTTCATCCACATACAGATCATGAAGGGAGGCCTAAAGGCTTTTTACATGTTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTGTGTTGGATCATACAGAATTGTTTGGACGTCCCATCAGAGTTGAATTAGCTCGAGAAAAAAGTTATAGCTACAGTAAAAGCCACTGGAGCAACTCATTCCAATCTCTAGCAGTATATGTCAAGGGTTTTGATTGTTCCCTCATGGAAGAAGAGATAAAAGCTAACCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACGAGGATATCAATTCCAAAATTTTATGATTCTGGTGCATTTAAGGGGTTTGCTGTCCTAGATTTCAAGGATCTTGACAGTGTGAAGAGAGCTCTAGAACTGGATCAAACTGAGATTGGAGGTTATACCTTGTTAGTTGAAAAAGCAAGAGCTCGACGTGATAACCAGAGTGTAGATGGCACTAGAGGTGGTGGACGGGATGGAAATGGCTCTAACAAAGGAGTTGGTTGGGGAGAAAGTGGTGGATGGCATTCTGGTGGGGTGAGTTTTGTTGGTGAAGACAAATTTGAGGGTGGCTGTGGCGTTGGATCACGTGATATGTGA 2031 0.3968 MDNESNPTLHVGTAAFSLPPKGRSEDRDEQEKQGSPKRQKRDEVAEEFKNEFQENINIDEGDNSEERHEETQEKKMEVLMDTTSNAQECDSKNAENDSSSHSSYDSNHDDNNSDFIDKPHMATNPVKSSENSEEEIEENASKTGQVNPEMLATLKERNAGSKTIYTKNLSYSVERADLEILFKDCGEIVDVRLHTDYEGRFRGFGHVEFATEEAVLKALKLNNTELLRCRIRIGVAPARRKCTPNRSFHVNYFSNKYQGSERIQPVRCSKISEDCEQETEEKDSKAVQKIPKVLDTWKQQNATSKTICARNLSYSVESDDIEILFKECGEIVDIRLQTDHEGRSRGFGYVQFATTEAAQKALELDNTKWFGRWISVVLAQEKGEYASNRSFSNWSNSFNKCERIEPFKRTGSSEYCEEDTEGKVLKDPWKSSSWLATMKEENASSKTIYVKNLSYRVEQADVENLFKECGGIVYVHPHTDHEGRPKGFLHVEFSTAEAAQKALVLDHTELFGRPIRVELAREKSYSYSKSHWSNSFQSLAVYVKGFDCSLMEEEIKANLEEHFGSCGEITRISIPKFYDSGAFKGFAVLDFKDLDSVKRALELDQTEIGGYTLLVEKARARRDNQSVDGTRGGGRDGNGSNKGVGWGESGGWHSGGVSFVGEDKFEGGCGVGSRDM* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2911 676 MobiDBLite consensus disorder prediction 624 648 - -
Pvu3g2911 676 MobiDBLite consensus disorder prediction 21 77 - -
Pvu3g2911 676 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 55 376 - -
Pvu3g2911 676 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 280 509 - -
Pvu3g2911 676 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 536 660 - -
Pvu3g2911 676 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 55 376 - -
Pvu3g2911 676 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 280 509 - -
Pvu3g2911 676 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 536 660 - -
Pvu3g2911 676 Gene3D - 124 260 IPR012677 -
Pvu3g2911 676 Gene3D - 534 654 IPR012677 -
Pvu3g2911 676 MobiDBLite consensus disorder prediction 78 101 - -
Pvu3g2911 676 SUPERFAMILY RNA-binding domain, RBD 155 256 IPR035979 GO:0003676
Pvu3g2911 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 539 620 IPR000504 GO:0003723
Pvu3g2911 676 Gene3D - 399 533 IPR012677 -
Pvu3g2911 676 Gene3D - 261 391 IPR012677 -
Pvu3g2911 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Pvu3g2911 676 MobiDBLite consensus disorder prediction 1 147 - -
Pvu3g2911 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 522 IPR000504 GO:0003723
Pvu3g2911 676 SUPERFAMILY RNA-binding domain, RBD 539 650 IPR035979 GO:0003676
Pvu3g2911 676 SMART rrm1_1 163 234 IPR000504 GO:0003723
Pvu3g2911 676 SMART rrm1_1 447 518 IPR000504 GO:0003723
Pvu3g2911 676 SMART rrm1_1 540 616 IPR000504 GO:0003723
Pvu3g2911 676 SMART rrm1_1 306 377 IPR000504 GO:0003723
Pvu3g2911 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 232 IPR000504 GO:0003723
Pvu3g2911 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 516 IPR000504 GO:0003723
Pvu3g2911 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 372 IPR000504 GO:0003723
Pvu3g2911 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 557 613 IPR000504 GO:0003723
Pvu3g2911 676 MobiDBLite consensus disorder prediction 102 116 - -
Pvu3g2911 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 381 IPR000504 GO:0003723
Pvu3g2911 676 SUPERFAMILY RNA-binding domain, RBD 439 526 IPR035979 GO:0003676
Pvu3g2911 676 SUPERFAMILY RNA-binding domain, RBD 298 392 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2911 Pvu-Chr3 50885211 50907273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2911 448 627 Eukaryotic Initiation Factors Gene Family AT2G36660 25.137 5.01e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2911 - K11294 pvu:PHAVU_003G282900g 983.4