Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2904 ATGGATTCTTCTCTCTCTCTCCACACTTCACCTAACCACAATGCCTTCCAACAACCGCAACCGCCGCCGCAACCGCCACCACTCTTAGTTCCCAAATCCGAACCCTTCTGGTCCGCCTTAGACCACGACGATATCGGAGACGAACTTGACCTACTCACTGAGTTCAACCGAGTCACCGAGTTGTTCCACCTTGCATTCGGAGGCACCAATGCCGTCATTCCCCCCGACTCCTTCGGACCTCAGCCTGCTGCATGCTCCCACCTGCTTCCTTCTGCGGATGTCGATTCGGTGTTCCAGGAAGACCCGAATTCGTCCACCGCCGCCGAGAGTGACGCCTCGCGCGCGATCGTCCCCGTCGCGGACCTCACGGTGAGGTTGGCGCCGAGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGCGGGTGATGGGTCTGTCGGTTAGGGAGGATGCGCAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTGTACGACTCGCTGCGCGTGTATACCGCTGTGGAGGAGGAGAAGCGGGTGGCGGCCTTGGTGGCGACGAAGGCGGCTGCGGTGAAGGAGGAGGAGGGGACAGCGGTGGAGGGCAGGACGCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGCACCGCCAGCAGCGAATAGTTGGCGCCATTCCTGGGATTGTGGTCGGGGACGTGTTCCTTTTCAGGATGGAGTTGTGTGTGTTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGGAAGTATGAGCTCCTGCGGGGAGCCTATAGCCACCAGTGTGATTGTTTCTGGGGGTTATGAGGATGATTTGGATAATGGTGAGGTTATAATCTACACTGGGCAGGGAGGGCAGGAGAAGAATTCGTCTAGGCAGATTGCTGATCAGAAGTTGGAGTCAGGCAACCTTGCATTGGAGAGGAGTATGCATTATGGTGTTGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTGTATGTGTATGATGGAGTGTATAAGATTGTTGATCACTGGTTTGATGTGGGGAGGTCTGGTTTTGGAGTTTACAAGTTTAAGCTTTGGAGGATTGAGGGGCAGCCTAAGATGGGAAGTGCTATTTTGAAGGAAGCTAGGAGCATTAGGAGGAGTGAGTCGGATTCTAACACTCTGCATTATGATTATCGGGATCCTCTTAGCTATGAGTATCTTCCCAGGACTAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGCCAAGCTACTGGTTGTAACTGTGTGGATGGTTGTGGGGATGGATGCTTTTGTGCTATGAAAAATGGGGGCGATTTTCCTTATACTCTTCAGGGGCATCTTGTGAAAGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGTTCTTGTCCTCCTCATTGTCGGAATCGTCTTAAGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCCCTGCAGACAGCTTGGGGGGTTAGGTCCTTGGACCTTATTCAAGCCGGTACTTTTATCTGCGAGTTTGCAGGGGTTGTTCTGACTAGGGAGCAGGCGCAACTCTTTGCAATGAATGATTTTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAACTCCAAATGTTTTCGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCACATCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGGAAGCTCTCTATATGTAACTGA 1851 0.523 MDSSLSLHTSPNHNAFQQPQPPPQPPPLLVPKSEPFWSALDHDDIGDELDLLTEFNRVTELFHLAFGGTNAVIPPDSFGPQPAACSHLLPSADVDSVFQEDPNSSTAAESDASRAIVPVADLTVRLAPRRKQSRQKELVRVMGLSVREDAQLRETVRRTRLVYDSLRVYTAVEEEKRVAALVATKAAAVKEEEGTAVEGRTRRLRGDLRAAGLMRERGLWLHRQQRIVGAIPGIVVGDVFLFRMELCVFGLHGQIQAGIDYLPGSMSSCGEPIATSVIVSGGYEDDLDNGEVIIYTGQGGQEKNSSRQIADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYDGVYKIVDHWFDVGRSGFGVYKFKLWRIEGQPKMGSAILKEARSIRRSESDSNTLHYDYRDPLSYEYLPRTSFPQFVFHQSGQATGCNCVDGCGDGCFCAMKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPPHCRNRLKQKGLKYRLEVFRSLQTAWGVRSLDLIQAGTFICEFAGVVLTREQAQLFAMNDFSLDVSTMRNVACYMSHSSTPNVFVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2904 616 MobiDBLite consensus disorder prediction 16 32 - -
Pvu3g2904 616 SMART G9a_1 224 383 IPR003105 -
Pvu3g2904 616 MobiDBLite consensus disorder prediction 1 15 - -
Pvu3g2904 616 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 53 616 IPR025794 GO:0016571
Pvu3g2904 616 ProSiteProfiles YDG domain profile. 229 379 IPR003105 -
Pvu3g2904 616 SMART preset_2 394 482 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu3g2904 616 Gene3D SET domain 397 616 IPR046341 -
Pvu3g2904 616 SUPERFAMILY SET domain 414 614 IPR046341 -
Pvu3g2904 616 ProSiteProfiles Pre-SET domain profile. 437 495 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu3g2904 616 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 27 543 - -
Pvu3g2904 616 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 544 613 - -
Pvu3g2904 616 Pfam Pre-SET motif 414 490 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu3g2904 616 Gene3D - 211 396 IPR036987 -
Pvu3g2904 616 SUPERFAMILY PUA domain-like 211 395 IPR015947 -
Pvu3g2904 616 MobiDBLite consensus disorder prediction 1 32 - -
Pvu3g2904 616 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 27 543 - -
Pvu3g2904 616 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 544 613 - -
Pvu3g2904 616 Pfam SAD/SRA domain 228 383 IPR003105 -
Pvu3g2904 616 Pfam SET domain 552 603 IPR001214 GO:0005515
Pvu3g2904 616 SMART set_7 498 609 IPR001214 GO:0005515
Pvu3g2904 616 ProSiteProfiles SET domain profile. 498 603 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2904 Pvu-Chr3 50783796 50785822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2904 125 605 Su(var)3-9 homologs AT5G04940 35.572 3.47e-97 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu3g2904 SAD_SRA 5e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2904 K11420 - pvu:PHAVU_003G282200g 1191.41