Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu3g2897 | ATGAAGCGCCCAAACGACGACGTCGCCAACACCTCAACGGCGAAGCCAACATTCCTAACCAAATCCCAACGCGAGCAATTGGCCCTCCAGCGCCGCCAGGATGAAGTGGCGGAGCAGAAGCGGCGCCAAGAGCAGCTTCTCTCCCGCAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGCCAAAGAGACAGAGACAGAGACAGAGAAAGGGACAGAGACCGCGACAAAGACAGGGACAGGGACCGCGAGAGGGCACGTGACCGAGACCGGGACCGCGAACCAGAACGCCGCAACAGAGAGAGGGAACGCGAAGAGGATAGCCGGGCCAGAGAGCGATCTCGTTCGGATAAACTGCCGGAGCGCGAGAGGACACGTGAGCGGGACCGCGAAGCCGAACGGCGCAACAGAGAGAAGGAGCGTGAAGAGGAGACCCGGGCACGCGAGCAAGCTCGCTTGGAGAAACTCGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCTATCAAGGAGCAGTACCTGGGTTCGAAAAAGCCCAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTCCGGTTCTCCTTCGACTGGGAGAACACGGAAGACACCTCGCGCGACATGAACGCTCTTTACCAGAACCCCCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGATCGCCGCGAGCAGAAGAAGCTCGCCGCGAAGAACGAGAAGGAGATGCGCGAGCAGATCCGCAAGAAGGACGGCGTCGAGGAGAAGCCCGAGGAGGCAGACGCCCTGCGCCGCAAGGAGGCCGCCGCCGATCTCTACGACACCTTTGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGAAGAGATGAGTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATTGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACTGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTATATCACCAGGCTTCCTCCCATTAGTGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAAACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATCAGACAGGGGTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAATCAGTGCAATTATGTGGTTCTTGATGAGGCGGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTAATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTGAAACCGGAGAATGAGGATGAGGAACTTGATGAGAAGAAGATTTACCGGACCACTTATATGTTTAGTGCCACCATGCCCCCTGCTGTGGAGAGACTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGTCTGAGAAATTTTACAAGCTCAAGAGATTGCTTGACGAGCTTAACGACAAGACTGCGATTGTGTTTGTCAACACCAAGAAGAATGCAGATATGGTTGCCAAGAATTTGGATAAGGAAGGGTATCGCGTGACCACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCCACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTCGCTCATGTTATCAACTATGATATGCCGGGGAATATTGAAACGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCGTTCAAAGTAACAGTCCTGTTCCACCGGAACTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGATCGATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGTGCATTAG | 2217 | 0.5404 | MKRPNDDVANTSTAKPTFLTKSQREQLALQRRQDEVAEQKRRQEQLLSRNHSSDPKPSSDRQRDRDRDRERDRDRDKDRDRDRERARDRDRDREPERRNREREREEDSRARERSRSDKLPERERTRERDREAERRNREKEREEETRAREQARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADALRRKEAAADLYDTFDMRVDRHWSEKKLEEMSERDWRIFREDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLKRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIETYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLVQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFVH* | 739 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu3g2897 | 738 | Coils | Coil | 29 | 49 | - | - | |
Pvu3g2897 | 738 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 349 | 544 | IPR014001 | - | |
Pvu3g2897 | 738 | CDD | SF2_C_DEAD | 556 | 685 | - | - | |
Pvu3g2897 | 738 | Pfam | Helicase conserved C-terminal domain | 569 | 676 | IPR001650 | - | |
Pvu3g2897 | 738 | CDD | DEADc_DDX23 | 329 | 545 | - | - | |
Pvu3g2897 | 738 | Pfam | DEAD/DEAH box helicase | 343 | 533 | IPR011545 | GO:0003676|GO:0005524 | |
Pvu3g2897 | 738 | Coils | Coil | 122 | 166 | - | - | |
Pvu3g2897 | 738 | Gene3D | - | 549 | 736 | IPR027417 | - | |
Pvu3g2897 | 738 | MobiDBLite | consensus disorder prediction | 705 | 738 | - | - | |
Pvu3g2897 | 738 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 571 | 715 | IPR001650 | - | |
Pvu3g2897 | 738 | MobiDBLite | consensus disorder prediction | 235 | 261 | - | - | |
Pvu3g2897 | 738 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
Pvu3g2897 | 738 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 318 | 346 | IPR014014 | GO:0003724 | |
Pvu3g2897 | 738 | PANTHER | - | 92 | 731 | - | - | |
Pvu3g2897 | 738 | SMART | ultradead3 | 337 | 559 | IPR014001 | - | |
Pvu3g2897 | 738 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 473 | 481 | IPR000629 | - | |
Pvu3g2897 | 738 | MobiDBLite | consensus disorder prediction | 1 | 181 | - | - | |
Pvu3g2897 | 738 | MobiDBLite | consensus disorder prediction | 713 | 738 | - | - | |
Pvu3g2897 | 738 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 394 | 697 | IPR027417 | - | |
Pvu3g2897 | 738 | SMART | helicmild6 | 595 | 676 | IPR001650 | - | |
Pvu3g2897 | 738 | Gene3D | - | 279 | 548 | IPR027417 | - | |
Pvu3g2897 | 738 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 92 | 731 | - | - | |
Pvu3g2897 | 738 | MobiDBLite | consensus disorder prediction | 27 | 177 | - | - | |
Pvu3g2897 | 738 | Coils | Coil | 230 | 256 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu3g2897 | Pvu-Chr3 | 50737797 | 50742048 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu3g2897 | 328 | 712 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 33.161 | 2.14e-60 | 207 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu3g2897 | K12858 | - | gmx:100799264 | 1154.04 |