Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2897 ATGAAGCGCCCAAACGACGACGTCGCCAACACCTCAACGGCGAAGCCAACATTCCTAACCAAATCCCAACGCGAGCAATTGGCCCTCCAGCGCCGCCAGGATGAAGTGGCGGAGCAGAAGCGGCGCCAAGAGCAGCTTCTCTCCCGCAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGCCAAAGAGACAGAGACAGAGACAGAGAAAGGGACAGAGACCGCGACAAAGACAGGGACAGGGACCGCGAGAGGGCACGTGACCGAGACCGGGACCGCGAACCAGAACGCCGCAACAGAGAGAGGGAACGCGAAGAGGATAGCCGGGCCAGAGAGCGATCTCGTTCGGATAAACTGCCGGAGCGCGAGAGGACACGTGAGCGGGACCGCGAAGCCGAACGGCGCAACAGAGAGAAGGAGCGTGAAGAGGAGACCCGGGCACGCGAGCAAGCTCGCTTGGAGAAACTCGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCTATCAAGGAGCAGTACCTGGGTTCGAAAAAGCCCAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTCCGGTTCTCCTTCGACTGGGAGAACACGGAAGACACCTCGCGCGACATGAACGCTCTTTACCAGAACCCCCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGATCGCCGCGAGCAGAAGAAGCTCGCCGCGAAGAACGAGAAGGAGATGCGCGAGCAGATCCGCAAGAAGGACGGCGTCGAGGAGAAGCCCGAGGAGGCAGACGCCCTGCGCCGCAAGGAGGCCGCCGCCGATCTCTACGACACCTTTGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGAAGAGATGAGTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATTGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACTGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTATATCACCAGGCTTCCTCCCATTAGTGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAAACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATCAGACAGGGGTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAATCAGTGCAATTATGTGGTTCTTGATGAGGCGGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTAATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTGAAACCGGAGAATGAGGATGAGGAACTTGATGAGAAGAAGATTTACCGGACCACTTATATGTTTAGTGCCACCATGCCCCCTGCTGTGGAGAGACTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGTCTGAGAAATTTTACAAGCTCAAGAGATTGCTTGACGAGCTTAACGACAAGACTGCGATTGTGTTTGTCAACACCAAGAAGAATGCAGATATGGTTGCCAAGAATTTGGATAAGGAAGGGTATCGCGTGACCACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCCACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTCGCTCATGTTATCAACTATGATATGCCGGGGAATATTGAAACGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCGTTCAAAGTAACAGTCCTGTTCCACCGGAACTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGATCGATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGTGCATTAG 2217 0.5404 MKRPNDDVANTSTAKPTFLTKSQREQLALQRRQDEVAEQKRRQEQLLSRNHSSDPKPSSDRQRDRDRDRERDRDRDKDRDRDRERARDRDRDREPERRNREREREEDSRARERSRSDKLPERERTRERDREAERRNREKEREEETRAREQARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADALRRKEAAADLYDTFDMRVDRHWSEKKLEEMSERDWRIFREDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLKRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIETYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLVQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFVH* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2897 738 Coils Coil 29 49 - -
Pvu3g2897 738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 349 544 IPR014001 -
Pvu3g2897 738 CDD SF2_C_DEAD 556 685 - -
Pvu3g2897 738 Pfam Helicase conserved C-terminal domain 569 676 IPR001650 -
Pvu3g2897 738 CDD DEADc_DDX23 329 545 - -
Pvu3g2897 738 Pfam DEAD/DEAH box helicase 343 533 IPR011545 GO:0003676|GO:0005524
Pvu3g2897 738 Coils Coil 122 166 - -
Pvu3g2897 738 Gene3D - 549 736 IPR027417 -
Pvu3g2897 738 MobiDBLite consensus disorder prediction 705 738 - -
Pvu3g2897 738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 715 IPR001650 -
Pvu3g2897 738 MobiDBLite consensus disorder prediction 235 261 - -
Pvu3g2897 738 MobiDBLite consensus disorder prediction 7 26 - -
Pvu3g2897 738 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 318 346 IPR014014 GO:0003724
Pvu3g2897 738 PANTHER - 92 731 - -
Pvu3g2897 738 SMART ultradead3 337 559 IPR014001 -
Pvu3g2897 738 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 473 481 IPR000629 -
Pvu3g2897 738 MobiDBLite consensus disorder prediction 1 181 - -
Pvu3g2897 738 MobiDBLite consensus disorder prediction 713 738 - -
Pvu3g2897 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 697 IPR027417 -
Pvu3g2897 738 SMART helicmild6 595 676 IPR001650 -
Pvu3g2897 738 Gene3D - 279 548 IPR027417 -
Pvu3g2897 738 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 731 - -
Pvu3g2897 738 MobiDBLite consensus disorder prediction 27 177 - -
Pvu3g2897 738 Coils Coil 230 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2897 Pvu-Chr3 50737797 50742048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2897 328 712 Eukaryotic Initiation Factors Gene Family AT1G72730 33.161 2.14e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2897 K12858 - gmx:100799264 1154.04