Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2895 ATGTACGAAGAAAGTAGTTGCTTTGATCCCAATGGGATGGTGGCAGAAGACTGTTTCTCCCAGATGGTTTCAAAATCAGAGGCAGTTATGTCTGTGAGTAGCATACAGCCCCAAAACACCTTTGGGATGGAAAACTTAGCCTACACATATTCCAGTGGAGAAGATGCTTCAGCTGTTGCTATGGAAATCATTGCACACCCCCAACAAAACTCATACAATCAAGTCAATAACTTGAACCCCCAGTTTGTGCAAGTGGTGAACAACCATGCTTCATGTGAGGAGCTTTATTCTTTCCCCCCTCACTCCTCCACACTTGAGAGGGGTCACCATGATCACCAATTTCCTTACTCCACACCAACACCAGATCTCCTCAACCTTCTCCACTTGCCAATCACCTTTGAAAACCAAAGCAGCAATCTTCCAAAACCCTCTGGCCCTATGGGAACAGCGGACAGCACAAACGTCTCCTCTGTTTCCTATGACCCTTTCTTGCATCTCAACCTGCGAGCACCTCCCCCAGCTCTGAGAAATGATTTTGCCTTTGGAGGAGGAGGGGGTGCCATAGAAGGCAGTGGAATTGCCTACCAAGATTTTGGAAATGGGGTGGTGGAGTTAACTCAAGATGTTGGGAAAAAGAGAGGGGGGAAAAGGACCAAGCAGTTTACCAGTACTACTACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGTGATAGAGCATCCGTGGTGGGAGATGCTATTAACTATATCAGAGAGCTTAAGAGGACAGTGGACGAACTAAAACTCTTGGTGGAGAAGAAAAGGCACGAGAAACAAAGGGTAGTAGTGATGATGAGGCACAAGGTTGAAACTGAAGGGCAAGAGGACTCGAATCTCGACCCAGATGATGGTTCCTACAATGAAAGCTTAAGAAGTTCTTGGATACAAAGGAAAAACAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTAACAATCAAGCTTGTTCAAAGGAAGAAGATGGATTGCTTGGTGCATGTCTCACAGGTTCTTGATCAACTCAACCTCGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTGTTCAATACCAAGATGTGTGACGGTTCTTGTGTTTATGCAAGTGCTATAGCCAACAAGCTCATTCAGGTCATGGACACAAGTTTGGTAGCAGAGTCACTCAATTGA 1251 0.4556 MYEESSCFDPNGMVAEDCFSQMVSKSEAVMSVSSIQPQNTFGMENLAYTYSSGEDASAVAMEIIAHPQQNSYNQVNNLNPQFVQVVNNHASCEELYSFPPHSSTLERGHHDHQFPYSTPTPDLLNLLHLPITFENQSSNLPKPSGPMGTADSTNVSSVSYDPFLHLNLRAPPPALRNDFAFGGGGGAIEGSGIAYQDFGNGVVELTQDVGKKRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVDELKLLVEKKRHEKQRVVVMMRHKVETEGQEDSNLDPDDGSYNESLRSSWIQRKNKDTEVDVRIVDNEVTIKLVQRKKMDCLVHVSQVLDQLNLDLQHVAGGHIGDFCSYLFNTKMCDGSCVYASAIANKLIQVMDTSLVAESLN* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2895 416 PANTHER TRANSCRIPTION FACTOR BHLH91 2 412 - -
Pvu3g2895 416 Coils Coil 264 284 - -
Pvu3g2895 416 PANTHER TRANSCRIPTION FACTOR BHLH91 2 412 IPR045895 GO:0006355|GO:0048658
Pvu3g2895 416 Gene3D - 210 297 IPR036638 GO:0046983
Pvu3g2895 416 CDD bHLH_AtMYC1_like 225 283 IPR045896 -
Pvu3g2895 416 Pfam Helix-loop-helix DNA-binding domain 226 267 IPR011598 GO:0046983
Pvu3g2895 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 287 IPR036638 GO:0046983
Pvu3g2895 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Pvu3g2895 416 SMART finulus 224 273 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2895 Pvu-Chr3 50726942 50728981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2895 1 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 39.130 5.18e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2895 HLH 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2895 - - vra:106767981 779.245