Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2892 ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACCTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTG 185 0.4757 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDS 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2892 61 PANTHER MADS BOX PROTEIN 1 60 - -
Pvu3g2892 61 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 1 1 60 - -
Pvu3g2892 61 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 Gene3D - 13 61 IPR036879 GO:0003677|GO:0046983
Pvu3g2892 61 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Pvu3g2892 61 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu3g2892 61 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2892 Pvu-Chr3 50664848 50665032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2892 1 61 MADS-box Gene Family AT3G30260 85.246 1.01e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu3g2892 SRF-TF 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2892 K09264 - gmx:100783045 121.709