Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2879 ATGGAGAAATCAAGGAGTTCAGACCAAGTTGTTGTGTTCATCGACCAACATAACCCTAAACCATCATCCATGGAAGCCGAAAATCATCAAGAGAAACTCAGGCCACCCTTAAAAGTGAGAACTCTGAACCGTCTGAACTTCTCAAAACCCAAATCCCGAATCCAAGAGTACAACTATGTTCCCCGCAACAAACTAGCAACCTCTGAAGAAGGTGACATTATCCAACCCACCTATAAGCTCACTTCCAATGAAGAAGACGATGAGGAAGAAGATGACTGGAAATGGGACAAGGAAGAGACGGAAGAAGAGGGGTCAGAGCATAACACAAAGTTGCACCAAAAGAGGAAGTTCAAAATCAAGTGGAGGCCGGTGATGGAGTGGCTTTTGTTTCTCAATATCTTGGCATGCTTGGTGTGTTCTTTGACCATTTCTTCCATTACCAACATGCACGTCCTGGGATTGGAGATTTGGAGGTGGTGTGTCATGATGATGGTTACATTCAGCGGTCGTCTCGTTTCAGGGTGGCTAGTTGGTGTGATAGTGTTCTTCCTGGAACGAAACTTCATGCTGAGGGATAAGGTGTTGTACTTCATATACGGGCTCAGAAAGAGCATAAGAAACTGTTTGTGGTTAGGTCTGGTGTTACTCTCCTATTGGAGCTTGGTATTCGACGATGTCCAGAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCGGTTTTGGTGGGCGCAACCATATGGCTGGTGAAGATCGTGCTGGTGAAGATGCTGGCGTCGTCGTTCCACGTGACCACGTACTTTGACAGAATGAAGGAGAGCGTTTTCCACCACTACATTTTGGATGCACTGTCGAGTCCGCCGTTCGAAGACGCGGAGGAGATAGTGCGGCAGCACCATCTGAAGGGGTCGAAGTCGATGCCGGCGAGGCTGAAGATGAAGGAGGCGAAGAAGTTGTACAAGTCGAATAGGTTTGGGTCGAGGAAGATCGACATGGAGAAGCTGAGAGAGCTGAGCATGGAGAGCACTGCGTCTGCTTGGAGTGTGAAGAGACTTGTTAACTATGTCAGATCTTCTGGCTTGTCCACCATTTCAAGGACTGTGGATGATTTTGGCAACGCTGAGTCTGAGATTAGCAGTGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAAGATCTGATGAGATTTTTGAAAAGGGTTGAGATACATACCATATTTCCACTATTTGAAGGTGCTCTTGAGACAGGACAAATCACCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAGTCATTGAATGATACGAAAACAGCAGTGCAACAGCTTCACAAAATAGCAAGTGCAATTGTGAGTGTGATAATAATCATTGTGATGCTTTTGGTGATGGAGGTGGCCACACTCAAGATAATATTATTCTGCATCACACAAACAGTTCTGATAGGTGTTGCCTTCCAAGGTACCTGCAAGACTGTGTTGGAAGCCATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGATGCGTCATTGATGGAGTTCATATGATCGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAACCAAGTTTTGCTCTCTAAGCCCATAAGCAACTTCTACAGGAGTCCAGAGATGGGGGATGCAGTTGATTTCACTGTCGATGTTTCAACTTCCATGGAGACCATCATTGCCCTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCCAACTATTGGAATCCAAAACACAGTGTGATAGCAAAAGGAATTGAGAATATGGACAAGCTGAAATTTGCCTTGTGTGTGCAACATACTATCAACCATCAGAACTACAGTGAGAGAAATGTTAGGATGACTGACCTCTTCTTTGAACTGAAGAGGATCTTTGAAATCCATGGTGTCAAGTATCATCTTCTTCCTCAGGAGATCCAAATCACCCATATGAACATTGACCCTGCAAAACTTCTCTTTCAATCATGA 2103 0.4427 MEKSRSSDQVVVFIDQHNPKPSSMEAENHQEKLRPPLKVRTLNRLNFSKPKSRIQEYNYVPRNKLATSEEGDIIQPTYKLTSNEEDDEEEDDWKWDKEETEEEGSEHNTKLHQKRKFKIKWRPVMEWLLFLNILACLVCSLTISSITNMHVLGLEIWRWCVMMMVTFSGRLVSGWLVGVIVFFLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLLSYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDALSSPPFEDAEEIVRQHHLKGSKSMPARLKMKEAKKLYKSNRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGQITRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNQVLLSKPISNFYRSPEMGDAVDFTVDVSTSMETIIALKKSIQMYIESKPNYWNPKHSVIAKGIENMDKLKFALCVQHTINHQNYSERNVRMTDLFFELKRIFEIHGVKYHLLPQEIQITHMNIDPAKLLFQS* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2879 700 MobiDBLite consensus disorder prediction 1 35 - -
Pvu3g2879 700 PIRSF Memb_At2g17000 8 695 IPR016688 -
Pvu3g2879 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 698 IPR016688 -
Pvu3g2879 700 MobiDBLite consensus disorder prediction 83 99 - -
Pvu3g2879 700 MobiDBLite consensus disorder prediction 78 107 - -
Pvu3g2879 700 SUPERFAMILY Sm-like ribonucleoproteins 521 579 IPR010920 -
Pvu3g2879 700 Pfam Mechanosensitive ion channel 471 676 IPR006685 GO:0016020|GO:0055085
Pvu3g2879 700 Gene3D - 530 579 IPR023408 -
Pvu3g2879 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2879 Pvu-Chr3 50546676 50553806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2879 98 690 Mechanosensitive Ion Channel Family AT5G12080 46.932 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2879 K22048 - gmx:100813521 1186.4